| Id Trinity | TRINITY_DN49814_c0_g1_i16 |
|---|---|
| Name Transcript | Ll_transcript_343578 |
| Sequence | AATACATGTTCCAAACAACAACCATCAAATAATAACCACACCACATCATCATAAGACATACCCACTTCTCTGTCTTAAGCCTCTTCAAATTCAATGATCC TTCTGTTGTGAAAAAAGAAAAGCAAAAGAAAGTTAGAGTTGTTCTTGAATGTTTGGGGCTAGAAGGCATAAGCAAATAATAGAAGAAACCAGAAACTTCC ACTGAATGGCAGAGGTAGAGAGAAAGAAGAAACACAACACTGCTTAAACGAGTGACGTTCATGCATAAACAGCAAGCACGTTCATTTTTTGTTAATTTTA TGCCATGGCTTACCAACATTATCGATCACAGTTTGGAGACACAACATTCACCAAAGTCTTTGTTGGAGGACTAGCTTGGGAGACTCCAACTGAAGAAATG CGCAAATACTTTGAGCAGTTTGGAGACATTCTTGAAGCTGTCATTATCACCGATAAGAACACTGGAAAATCTAAAGGCTACGGATTCGTAACATTCCGTG ATCATGAATCAGCTAGAAGGGCTTGTGCAGATTCAAACCCAGTAATAGATGGAAGAAGAGCAAATTGTAACATTGCTTCTCTAGGAAGACCTAGACCATC ACCACCAAGAGGAAGAGGTACATTTCAAGGTGGAGGAGGGACCGGGACAGTACAGGGTGCAGGAACATACAGTGGTGTTCCATCAGCAGGACCAGCGGCA CTGTCACCACCACCACTATTGTACCCACAACCATATGGCTACCCTACCTACACTCCTGATTATGGTTACCACCAAGCCACAATGTACAACCCACAGATTC AGCAGGCACAATACTATCAACAATTTTATGGACCATCAACATCCACCATAGGCTCTCCATATTACTATGGATATTCAGTACAAGCACCAAGGGGTACATT TTCTACACCCCAAGCACATCGTTTGCCAGCTGGACCATCTTATATATACTACCCTACTTCACCTATGGAAGCCTCTTCTGCATTTCGTCCACCTTATCAC CCACCAACAAGGCAAATCCCTCTGTCCCCTACTGGTAATTTAATTTACCCTTTGATCTTTTATCATTAATGTTTCTAATTTTCTATACTTTATGTTCTAT GGACTTATATATTAAACACACACACATGGTTACACAGAGAAGGGGAGTGAAAGAGAGAGGTACAGAGAGAGATTTATGGATTATGATGCACTTACTGACA CACAATATTATATATATTACGATTTGGCTGTAAAACATGTGGCCATGGGGTCCACAAGGGCAACCTCAGCCCCATGTGAATGAGCTGTCTTGGTTTTTTC ATCGACCGTATGCATGGGTCAATGTAGAGAGAGGGTCATCATTTAAAGTAACAGTGAATGCATGTGGTTTTCAGTAGGAAATGTTGGTGGTTAATTCTTT AACTGGTGCAGTCAAATGGTCTTGCATTCATGCATTGGACCACATTGCTTGTTATGTTAGATATTATCATTGTTCTCTGAGTTTTAATTTTTAAACATGC ACATGCACCACAGCAAAAGTATATGATTAACCTTTATATATAATCAGTTGCCTAATGTATGAGATTAGTTTAATTATGATTAACTTGTACTCTTTACAAC CTCAATTACTAACACAATGTGATTATTGTTTATTGTGTTGATCAGATTCACAAAGTCAGCAACTTACCTCCTCAGAGACAGCCCCTGGAATAGTTTTAAC TTCTGAAAGTTCAAATACTCAAGGGAAGAGCTAATAAATTTATATACCTGCTAAGTTTCAACTATATAATCTTCAAATTATATTTCATCATGACATTAAT TCTTGATCTTTTTTCTACATTTATATCTTCATTTTTTGGGGTCCACATGCTGTAGCTTTAACCAAGAATGGTCACTGCTATGGCATTCATTTGTTGGACA TCAACTTTCTTCATGGAGATTTTCTTCAATCTCCTTTTCCTTGTCTTAAGAGGATTTTCACTCAAATCGTTTTATTAATTAATTATATTTCCTTTTAAGT TATACTTTCTCTGGTTGTAAGAGCTTAACATGTTCAATCATTATCTCACTGAGCAAATAATTAGAGTCCCCAAATAAAATATTTCGTTAAATCATTAAGA TCCCATGTTAATAGTACATATGATATTATGAGCTGCTAAATTAGTATTTGCAGTTGCAATA BLAST |
| Tissue | pods |
| Gene name | LI_gene_172424; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_343578
| Blastp | Probable RNA-binding protein ARP1 from Arabidopsis with 68.48% of identity |
|---|---|
| Blastx | Probable RNA-binding protein ARP1 from Arabidopsis with 69.05% of identity |
| Eggnog | RNA binding motif protein(ENOG4111PGT) |
| Kegg | Link to kegg annotations (AT3G54770) |
| CantataDB | Link to cantataDB annotations (CNT0001828) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019460938.1) |
| Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (PF00076.21) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |