| Id Trinity | TRINITY_DN49816_c3_g2_i2 |
|---|---|
| Name Transcript | Ll_transcript_341198 |
| Sequence | TTATACGGTTGTATATCTATAAATAGAGTTAGGATCTTTTCTATTAATGGAGAGGCAAGTGCATCAAAAATCAAAGAAAAATGCAACTTTGAATAACATA TTTATCCTTTCAATTACCATAAAGTTATATTATTGCCATTAAAAACAAAGGTAAAAATATGGATGAGTAACATCATTGTAAATTTGAGTTTATTACATCA ATTTTTGAACACGTTTGGTACTGCTTGTTTTTCTCTCTATTTTCCATTTTATACATATATTTCATAGGAGAGATACTCATTTTAAGTTATACCGGTTACA TTCAATCTCATACATTCATTTTCTTAGATTTAACGAACCAAATGGGTGATTGAAATAAATGATGAGAGAGAGAATATAAAACTTAAATGATTTTAAAATT TCACTCATTTGGTCCGTTAGATCTAAGAAAATGAATGGATAAGATTGAGTGTAACCAGTATAACTTAAAATGAATGTAAATTGATCCCTCCTCATTTCAG ACACAATTAATATATTATCTATTATTTATACACACTATCAGTTAATACATTTTTTTCTCATAAATTAAATAGACATCATGAAACTGTATCCGATAAATTT ATTTTTAGGTATATATGTGTTGGCTAAAAGAAGAATGTAGATATTTTTCTGTTCCGTGTGCTATTTTCTGTTGTTGTTAAATTGTTATTTTCTGATTTTG TCATGTTTGGTTAGATGTACAAGTAGGTATCTTTATTTATTTAATTAATATTTTGTAACAAATTTATGGGCTACCAACTAATTAAGGTTATATAATGGGG GTGGGGAGAGGATTATAATGTATAATATCTATATAATGTCAGTGTAAATATTTATATCTTGATATATCATTTATCATTTATTATAATATTTTTTAAAGAA TCAATAATGATTAAATATAAATAAATGATACAATAATAGTATATAAAACTCATGTTTTATCAATATATTATTATATGTATAAATAAAAGTTAGGTTTTGA AAAGTTTGGACATGTCACATTGGAATGTGCTGGACGAAACCGTGTTAGACATTGGTGAATCTTTAAATTATTAATTTGAGGTAAGAGAAAGACTTATTGA ACACGTGTAAATTATGACACTTGTTGAACACTTCTTTCAAGTGGAAACACGTTATGTTTCTACACCAATATTACACCAACATGTAAAACGTGGACAGAGA TCTTTGTCACATAGTCTATCCCCAATTTCTATCCCTGACCAATCAGCTTTGAATAACTAAAATAGAAATATAATATTTTGTCTTTAAAAAAATTATTTTT ATTTATGTGACAATTTTCAATTAGTGAGAACAGGGAATTATGACAGGTTTCGGGACATATAATCCACTCCTTAAAACGTGGTGATATATATCTACGGCAA AGCCAGCTTTTAGCAAATAAGAAGAAAAAACAAATAATGTTATCTTTTCACATAAAAACATATACATGTTCTACCTTTATTCCAATTTAGTGAAAGAAAG AGAAGGTGGAGGAAAAAGTTTTATTTAAATTTTCATTTTAGAAGTCACACATGTAAGGTTGGTATATGAGTTTTGGATATAGGAATATCATAATTGTTAA TTGTTATATGTAAAAAATAAACAAAAACTGTATAATTGAGGGGAATAAAATAAAAATAGCTCTTGATAAAATAAATTATATACAAATACAAGGACATTTG CACCTCATTTTCATTATCTACATCATTCATGAGTTTTTTTGTTAATAAAATAATAAAAATACCCTTTTCACTAAAACACTTTATATGTTTCATCTATCAT AAAAAGTAAAAACAAATTGTGAACATTGTTAATTGTTTTTTTTATTTTTTCATATATGATTTCTTAATATATTTTTCCATCAACCACCTTGGCTGAAACT CACGGTTGATTTAGAAAAGGTTCTTTAGGGCTTAATCTCTTCATATGATCATTAGGAATATATATGTGTGGCTAAAGTCATTAGACATAACTTTTGTTTG ATGAAAGTGATTGGTGAATATAGTGAGGAAGTGATTAAGCTAGGAGGAAGGATCCTAAAGATAATGTCAAAAAATCTTGGCCTAAAAGAAGATGACCTTA TAAAAGCATTTGGTGGAGAAAATGAAGTTGGTGGTTGCTTAAGGGTCAATTTTTATCCAAAGTGCCCACAACCTGACCTTACTTTAGGACTATCCTCTCA CTCAGACCCTGGTGGAATGACAATTATTCTCCCTGATGATTTTGTTTCTGGACTTCAAGTATATAGAGGAAATGAATGGGTCACTGTTAAGCCTGTCCCT AATGCTTTCATCATCAACATTGGTGACCAAATTCAGGTGATGAGCAATGCAATATACAAGAGTGTAGAACACAGGGTGATTGTGAACTCAAACGAAG BLAST |
| Tissue | pods |
| Gene name | LI_gene_172436; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_341198
| Blastp | Probable 2-oxoglutarate-dependent dioxygenase At5g05600 from Arabidopsis with 68.7% of identity |
|---|---|
| Blastx | Probable 2-oxoglutarate-dependent dioxygenase At5g05600 from Arabidopsis with 67.16% of identity |
| Eggnog | 2OGFe(II) oxygenase(COG3491) |
| Kegg | Link to kegg annotations (AT5G05600) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019413119.1) |
| Pfam | 2OG-Fe(II) oxygenase superfamily (PF03171.19) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |