Id Trinity | TRINITY_DN49819_c5_g1_i1 |
---|---|
Name Transcript | Ll_transcript_342254 |
Sequence | AAGATAAAAAAAGAAAAAAATAATCTACCAGAAAAATTAAAGAAAATCAGATAATTTGAAAAGGGTAACAGAAGAAAGAGAAAGAAAACCCAGGATGCAG AATATCTGAGTTTTTGTTGCCATAAATGTAAGAAAAGTTGAGGGAAATTTAGAGAATTGGTGAAGTTTCCATTGCAATGAACAAAACATAAAACAATCGT TTCATTAGTATCTCCGACATGGGTTCAGGTTCTAGTAGAGTTGGGTCTCCTCAATCATCTACACCCAGAGACAGGTTCAACCACACCCCTCGTTCTACAA CTTCCTCTTTTCTCCGCGGTTCCTCCACCTATCAGGTGGAAGAACATCCATCTGAACCTCAGGTAGATCCAGCAATAGAGTTTGATAATGAAATGTATAA AGTCACTGAGGAATCATCTTTATTGTGTACAGAAGCTAGAACTAGCCGCAGTACCCGTGCTGAAACTGCCACCTCATCTGATACCAGAACTGAGTTCTGT GGAAATGCTACTGTTGAAGGTTCTTCCAGAAATGTTGCAGCAGCTAGTCAGACGAAGTGTTTATCTGAATTCGAAGAGCTAGTCCCACCTTATCAGGTAA ATGCTGGTCATAATCACCATGAATCATATAGGGATATTAGCAACACAGCTAGTACTTCATCTGTAGAACAGCAATCTTCAGATCCAGTCTCTGTGAATGT TTCTTCTAACGAAGATGTAGTCAATGCTGTTGATGATCCAGTGGTTAGTGGTGGCTCTCAAATCTCTCGCGAGACAGTGCATCCAAGGAATTCCACCCCT CAAGAGCATGGAAATTCAAGTTCTGGTGAAATCTCTGTTGAGAATCACACAAGTGCTTTCATAGCTACCCGTGATTCTTCCAGTCCTGTTGCTCAAGCTT CAAACTTACCAGAAAATTCTCAACTACCAGAAGAAGAATCACGTCAGGAGACGATCCCTTCAGGTTTAGGTATTCTTGTGTCCAATCGGGAAAGAGGCCA GGGAAGTGATGGTGTGCTTCAAGTTGATGTGGTCGCAATATCTTCCAGCATGTTGTCTGGCAGCAATGCTGATGTCGATGATCATGATGTCAGAAGGAGT GGTAGAAGATTATTCTGGGATGCCTTTTCACGACGTAGTTCTAGAGGGCTTGGTGATTCTACGACAATGATCTTCTCTGCTGGTGGTGCCGATGATCCAG AATCTCGGGATCGATGGCTTGTTGATTTTGGTGGTGATTTCTCAAATAATAGGGTTCGAGGTCCTTCTGGCTATATGGGCAGTAGAATTCACAGATTGAA TGGACGAATGCGGCACTCAAGATCTGAGATATGGGAAAGGCTTCGTGGCGGCCTTGATGAGATTGGTCAATTAAATTCTTCCTGTCCACTAGGACTCCAT GCAGATGGTATGTGCTCATGTGACTCTTCCCCAATAGCTGAGGAATCTAGCACTCGAGCAAGTATTTATAGAATAGTCATGCTAGCAGAGGCTCTGTTTG AGGTTTTAGCTTTAAACCTCTGCTTGAATTTTATAATTTCTGTTTGCTCCTAGATTCGATTTATTCTGGATTTCCTTCGTTGTCTAATGCTTTTCTTAAA TACTGAAGTTCTATGCATCGTAATTTTGTTCTTATCACACTAAAAATATTGCTTAATATTTCCGGCATTTATTGCTTTATATCTAACTAGGATGCAATTG CGGGGTAGAGTGCTTACTTGATAAGTTATTTCAGTGTGGATCGTCCTTCGATTTTGTTACCATTTAAGCCTCTTTCTCCATAATCAATTCTATTGATAAT TAAGATTATCTGATATTGGATTTAATAATTTAGTGAGGCTTATCCCATCTACGGAGGAAAACAATTCTCATTCCTTATGTAGACCTGAAAATGTTTTGTA GTGCTAGGATGTTATCTACTGTTTGTTTATTAAATGTGCATCCTTTCGATCTAGCTTTGCGCTGGAGACTTTTCAGGATAGGGTGTGCACTTCTCCCAAT CCTCTAAATTAAGTATGGATACAATGAAATCTCCAATAAAATAAATTCTCTGAGTAATTTAGAATGCAAATATGTACCATAGTATTAAATATCCCTGAGT TAAGTACTGAACCCAACAAATATGCTTGAGTTTATGCAATCATGAATAGAAAACTTGATTGGGTATATCAAAATACTCATCCCTGTAAGGATGTCTTACT TTCTGAACCTTCTCCCTCCTTTTTGTTTGTCAGTATTTGTTTGTAATCATTTCTTTACATTTACTTATCCATAATATATATGTGCATTCACCTGATAATT TAAGTTTCTGGAGTTGATTCATGACATGGAATCAGAGCCTCTATGACCAAGTGGTTAGTGTTTGATCTTTGGGGCTCTCATTCTTCTAAATAAAAACCTA CAAGTTGAATTTCACAAAATGGTGAAGAGGGGCCTGTGTTGTCCACCTTCTTTTTTTATAAGAGAAAACGCATTGAAGGAGCAGAAGGGTGGTGCTTATC CCATTTACCTTCAAGGGCATTCAGAGAATCACCGCCCAGCCCCAAATACGTTGTACAGAACGGACCTTAATGATCTGCAACCTTAAATATTTATACAACC AGACACCAAAAAAAAAAAAAAAAATCCCCTCCTCAGATCTTGTAGCAGGTTATAGCTACGTAATCATGAGAACTCTACTTTAGATAGTATTGTCTACAGA TTACACTTTACACTTCATGCCGAAAAGGGCTCTTGCATGATTAGGCGAGTTAGAGATATAATAAAATCAACGACGTGCCTTCATCTAACAACTAAAATGT TTCTAAGAGATAGTTTATGACAGTGCCTTTAATGGAAAACTAATATGTTGTAATTGAAGGCTGCTCAGGTCTTAAATTTGCATTAGCCATGTGATATATT GTTAGGTACAACAGTTTTGTGCATAAAAAACTACTTTGCATATATACTGTTTTGATTACATAAAATTTGCCCCTTTAGGTATATTTGACCGAAAATGGTT CTATACTTTCCTTCAACTCTTGTTTTTTTATTGGATAAAACCTACATTTTTTTGCAATTGGACTAACCAAAACCAATTTACCTGGAACTTATTTTTCGTC TGCAGGTTTTAGATGAAATCCATCGGCAACCTGTATCACTTTCCCTATCCATGGTCTCACTCCCTGCACCTGAATCAATTGTTGACTCTTTCCCTCTGAA GTCTCACAAGAAGGTTGATGCAGCTAATGGCAGCAATGACACTGAACAATGTTACATATGCCTGGCGGAGTACGAAGAAGGGGACCAAATACGAATTCTT CCTTGCAACCATGAATATCACATGATGTGTGTTGATAAGTGGCTTAAAGAAATACATGGTGTATGCCCTCTTTGTCGTAGCAATGTTTGTGGAGGATTAA CGGAGTCTGCTGCCGACTCAGAAATGCCAACTCATTGATATTGTACACATGAATGTAAATATCCATTTCTTCAAATATATTTTATCCCTTGCCATGTTGC ATATAAAACAGCTTTTTAGAGTCCAATGTACAAAGTAAGATTTCGTATCCGAATCTTGTAATGCTTCCAAACAGTTACAGATTTTTGATTCTGTCATAAT CCATGTCATGACCATCTTGTGGCATTGCTGTTGTTTGGGTAGTTAGGTTGTTGAAATTGTATGTGTTCTGTAATCCTCGGGCATGGTTGTGGCATTGCCA TGTTTGGGGAATTAGGTAGTCAAAATTGCTTGTGTTCTCAAATCTATGTTGTTACACTAGTTCTTGTCTCAGCGCAGTTCACACTATTGTGACCAACTGC TGTTGCATATCAGAAAAAACAAATCAT BLAST |
Tissue | pods |
Gene name | LI_gene_172472; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_342254
Blastp | - |
---|---|
Blastx | RING-H2 finger protein ATL52 from Arabidopsis with 44% of identity |
Eggnog | - |
Kegg | - |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019441071.1) |
Pfam | - |
Rfam | - |
GO | - |