| Id Trinity | TRINITY_DN49819_c5_g1_i3 |
|---|---|
| Name Transcript | Ll_transcript_342256 |
| Sequence | AGAAGAGTGAGTGGGTAAAAGTGTAATTAAACAAATAAAAATGTGTATTTTATATTTTTATGTAAGAAGAAGAAGAAGAAGAGAGAGAAACTCAATTATT TTGAAAAGAGAAAGAAAAGTATGGATGAGTATGTTTGAGTTTGTTGCCACAAATGTAAGAAAAGTTGAGCCAATTTTTCTGTAGTTTGTTGAGCTTTCCA TTGCGATCAACAAAACATAACATCTCACTCTTCTTCTTCTTCTCCTTCTTCTTCTTCTTCTCTTTTTTCTTCATGGGTTCAGGGTCTAGTAGACTTGGGT CTCGTCAATCATCTACTTCAAGGGATAGGGTTAACCGAAACCCTCGCTTTAATGTTTCTTCTCTTCTTCTCTGCGGTTCCTCCACCTCACGCGCCACCTA TCAGATGGAAGAACATCCATCTGAACTTCGGGTAGATTCAGCAACAGATTTTGATGATGGGATTCAGAATGTCACTGAGGAATCATCTTTATTGTGTACA GAAACTAGAATTAGTGTCAGTCCCCATGCTGAAACTTCAACCTCATCTGATACTAGAACCGAGTTGTACGGGAATATTACTGTTGACGGTTCTTCCAGAA ATGTTGCTGCGAGTAATCAGATGATGCGTTTGTCTGAATTTGAGGAGCTAGTCCCACCTTATCAGGTAAGTGCTGGTCATAGTCGTCATGTGTCATATAG GGATAGTAGCAACACAGCTAGTACTTCATCTGTAGGACAGTCTTCAGATCCAGTATCTGTAAATGTTTCTACTAACAAGGATGCAATCAATAATGTTGAT GATCTAGTGGTTAATGGCGTTTCTCAAATCTCTAGTGAGACAATGCATCCCAGGAGGTTAACCCCTCAAGAGCATGGAAATTCGAGTTCTGGTGAATATC CTGTTCAGAATCAGACTAGTGCATTCATAGCTATCCATAGTTCTTCTTCTGACCCTGTTGCTCAAGCTTCCAACTTACGAGGAAATTCTCAGTCATTAGA AGAAGAACCACGTAGGGAGACGATACCTTCAGGTTTAGGTATTCTTGTGTCCAACCGGGAAAGAGGGCAAGGAAGCGATGGTATGCTTCAAGTTGATGTG GTCACAATATCATCCAACATTTTGTCTGATCGCAATGCTGATGCCAATGGCCATGATGCTAGAAGGAGTGGTAGAAGATTATTTTGGGATGCCTTTTCAA GACGTAGTTCTAGAAGGCTTGGTAATTCTGCAACAATGGTCTTCTCTGCTGGTGGTGCTGACGATCCAGAATCTCAGGATCGATGGCTTGTTGATTTTGG TGGTGATTTCTCAAATGATAGGGTTGGAGGTTCTTCTGGCTATATGGGCAGTAGAATTCACAGATTGAATGAAGGAATGAGGCACTCAAGATCTGAGATC TGGGAAAGGCTTCGTGGTGGCCTTGATGAAATCAGTCAGTTGAATTCTCCATGTCCGTTAGGACTCCATGCCGATGGCATGTGCTCATGTGACTCTTCCC CAATAGCTGAGGAATCTAGCACCCGAGCAAGTATTTCTAGAATTGTCATGCTAGCAGAGGCTCTGTTTGAGGTTTTAGCTTTGAACCTCCTCTCGAATTT TATAATTTTTGTTTGCTACTACCTACTAGATTTGGTTCATTTTGGCTTTCCTCTCTTGTATCATGTTTTTTCATGAATAACTGAAGTTCTATGCATCATA ATTTTATTATTATAAAAAAATTGTTGCCCATATTTCTGTTATTTGCGGAATGCCAATTAGTTATATCTTACTAGGATGCAATTGACATGGTAGAGTCAAG TGTGCTTACTGGATAAGTTATTTGAGCGTGTATGTTCTAGTGGTTTTGTTTTTCACCATTTAGGTCTCTTTTCTACATAGTCAATTTTCTTGATAATTGA GATTTTTTTTATATTCGATGTCATAATTTAGTCAGGCCTTTTCCAATATTATATCGGACTTCTTTTATCGTGCAATTATCTACAGCGGAAAAAACAATTC TCATTCCTTACATAAACCTACAAATGTTTAGTGTTGATGTCCTCTATTGTTTTTTATTAAATGTGCGTCCTTTGAATCTAGCTATGCATTGGAGACTTTT CGGGATGGGTGGTCAGTTGTGCTCTTCCCCCAATCCTGTAATCTGTAAATAAAGAATGGTTACAATGAAGTCTCAAATAAAATGTAATCTAAAATCATTC AGAATGCTCATCTGTACTATATTATAAAATATGCTTGAGTTGTGTACTGCACCTAAAATCTCTATTTGGGATATCTAAATAAGTATCCCTATAAGGTGGT CTTATATCCTGAACCTTATCCCTCCTTTTTGTTTGTCTACGATGTTTATTATGTAATAATTATTTTACGTTTACGTAGACATAACATCTCTCTGTGACTC TGATATATGTAAGCATCTTTTAAAAAACAGTACATGTTAAGAGATATAATAAAACTATTTGTGCATTCACATAATAGTTTAAGTTTTTGGAGTTGATTCA TGACATGGAATCAGAGCCTCTATGACCAAGTGGTTAGTGTTTGATCTTTGGGGCTCTCATTCTTCTAAATAAAAACCTACAAGTTGAATTTCACAAAATG GTGAAGAGGGGCCTGTGTTGTCCACCTTCTTTTTTTATAAGAGAAAACGCATTGAAGGAGCAGAAGGGTGGTGCTTATCCCATTTACCTTCAAGGGCATT CAGAGAATCACCGCCCAGCCCCAAATACGTTGTACAGAACGGACCTTAATGATCTGCAACCTTAAATATTTATACAACCAGACACCAAAAAAAAAAAAAA AAATCCCCTCCTCAGATCTTGTAGCAGGTTATAGCTACGTAATCATGAGAACTCTACTTTAGATAGTATTGTCTACAGATTACACTTTACACTTCATGCC GAAAAGGGCTCTTGCATGATTAGGCGAGTTAGAGATATAATAAAATCAACGACGTGCCTTCATCTAACAACTAAAATGTTTCTAAGAGATAGTTTATGAC AGTGCCTTTAATGGAAAACTAATATGTTGTAATTGAAGGCTGCTCAGGTCTTAAATTTGCATTAGCCATGTGATATATTGTTAGGTACAACAGTTTTGTG CATAAAAAACTACTTTGCATATATACTGTTTTGATTACATAAAATTTGCCCCTTTAGGTATATTTGACCGAAAATGGTTCTATACTTTCCTTCAACTCTT GTTTTTTTATTGGATAAAACCTACATTTTTTTGCAATTGGACTAACCAAAACCAATTTACCTGGAACTTATTTTTCGTCTGCAGGTTTTAGATGAAATCC ATCGGCAACCTGTATCACTTTCCCTATCCATGGTCTCACTCCCTGCACCTGAATCAATTGTTGACTCTTTCCCTCTGAAGTCTCACAAGAAGGTTGATGC AGCTAATGGCAGCAATGACACTGAACAATGTTACATATGCCTGGCGGAGTACGAAGAAGGGGACCAAATACGAATTCTTCCTTGCAACCATGAATATCAC ATGATGTGTGTTGATAAGTGGCTTAAAGAAATACATGGTGTATGCCCTCTTTGTCGTAGCAATGTTTGTGGAGGATTAACGGAGTCTGCTGCCGACTCAG AAATGCCAACTCATTGATATTGTACACATGAATGTAAATATCCATTTCTTCAAATATATTTTATCCCTTGCCATGTTGCATATAAAACAGCTTTTTAGAG TCCAATGTACAAAGTAAGATTTCGTATCCGAATCTTGTAATGCTTCCAAACAGTTACAGATTTTTGATTCTGTCATAATCCATGTCATGACCATCTTGTG GCATTGCTGTTGTTTGGGTAGTTAGGTTGTTGAAATTGTATGTGTTCTGTAATCCTCGGGCATGGTTGTGGCATTGCCATGTTTGGGGAATTAGGTAGTC AAAATTGCTTGTGTTCTCAAATCTATGTTGTTACACTAGTTCTTGTCTCAGCGCAGTTCACACTATTGTGACCAACTGCTGTTGCATATCAGAAAAAACA AATCATâBLAST |
| Tissue | pods |
| Gene name | LI_gene_172472; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_342256
| Blastp | - |
|---|---|
| Blastx | RING-H2 finger protein ATL52 from Arabidopsis with 44% of identity |
| Eggnog | - |
| Kegg | - |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019453130.1) |
| Pfam | - |
| Rfam | - |
| GO | - |