Ll_transcript_342257

• Id Trinity: TRINITY_DN49819_c5_g1_i4
• Name Transcript: Ll_transcript_342257
• Sequence: AGAAGAGTGAGTGGGTAAAAGTGTAATTAAACAAATAAAAATGTGTATTTTATATTTTTATGTAAGAAGAAGAAGAAGAAGAGAGAGAAACTCAATTATT TTGAAAAGAGAAAGAAAAGTATGGATGAGTATGTTTGAGTTTGTTGCCACAAATGTAAGAAAAGTTGAGCCAATTTTTCTGTAGTTTGTTGAGCTTTCCA TTGCGATCAACAAAACATAACATCTCACTCTTCTTCTTCTTCTCCTTCTTCTTCTTCTTCTCTTTTTTCTTCATGGGTTCAGGGTCTAGTAGACTTGGGT CTCGTCAATCATCTACTTCAAGGGATAGGGTTAACCGAAACCCTCGCTTTAATGTTTCTTCTCTTCTTCTCTGCGGTTCCTCCACCTCACGCGCCACCTA TCAGATGGAAGAACATCCATCTGAACTTCGGGTAGATTCAGCAACAGATTTTGATGATGGGATTCAGAATGTCACTGAGGAATCATCTTTATTGTGTACA GAAACTAGAATTAGTGTCAGTCCCCATGCTGAAACTTCAACCTCATCTGATACTAGAACCGAGTTGTACGGGAATATTACTGTTGACGGTTCTTCCAGAA ATGTTGCTGCGAGTAATCAGATGATGCGTTTGTCTGAATTTGAGGAGCTAGTCCCACCTTATCAGGTAAGTGCTGGTCATAGTCGTCATGTGTCATATAG GGATAGTAGCAACACAGCTAGTACTTCATCTGTAGGACAGTCTTCAGATCCAGTATCTGTAAATGTTTCTACTAACAAGGATGCAATCAATAATGTTGAT GATCTAGTGGTTAATGGCGTTTCTCAAATCTCTAGTGAGACAATGCATCCCAGGAGGTTAACCCCTCAAGAGCATGGAAATTCGAGTTCTGGTGAATATC CTGTTCAGAATCAGACTAGTGCATTCATAGCTATCCATAGTTCTTCTTCTGACCCTGTTGCTCAAGCTTCCAACTTACGAGGAAATTCTCAGTCATTAGA AGAAGAACCACGTAGGGAGACGATACCTTCAGGTTTAGGTATTCTTGTGTCCAACCGGGAAAGAGGGCAAGGAAGCGATGGTATGCTTCAAGTTGATGTG GTCACAATATCATCCAACATTTTGTCTGATCGCAATGCTGATGCCAATGGCCATGATGCTAGAAGGAGTGGTAGAAGATTATTTTGGGATGCCTTTTCAA GACGTAGTTCTAGAAGGCTTGGTAATTCTGCAACAATGGTCTTCTCTGCTGGTGGTGCTGACGATCCAGAATCTCAGGATCGATGGCTTGTTGATTTTGG TGGTGATTTCTCAAATGATAGGGTTGGAGGTTCTTCTGGCTATATGGGCAGTAGAATTCACAGATTGAATGAAGGAATGAGGCACTCAAGATCTGAGATC TGGGAAAGGCTTCGTGGTGGCCTTGATGAAATCAGTCAGTTGAATTCTCCATGTCCGTTAGGACTCCATGCCGATGGCATGTGCTCATGTGACTCTTCCC CAATAGCTGAGGAATCTAGCACCCGAGCAAGTATTTCTAGAATTGTCATGCTAGCAGAGGCTCTGTTTGAGGTTTTAGATGAAATCCATCGGCAACCTGG ATCACTTTCCCTATCCATGGCCTCACTCCCTGCGCCAGAATCAATCGTTGACTCTTTCCCTTTGAAGTCTCACAAAAAGGTTGATGCAGCTGATGATGGC AATGACATTGAACAATGTTACATATGCCTGTCGGAGTACGAAGAGGGGGACCAAATACGAGTTCTTCCTTGCAACCATGAATATCACATGATGTGTGTTG ATAAATGGCTTAAAGAAATACATGGTGTATGCCCTCTTTGTCGTGGCAATGTATGTGGAGGATTCCCGGAGTCTGCCACCAACTCAGAATTGCCATCTCA TTGATACTGTACACATGAATGTAAATATTCAGATCTTCAAATATATTTGATCCTTGGCAAATGTTACATATGAAATAGACTTCAGAGTTCGATATACAAA GTAAGATTTCAGATTCGAATTTTGTGATGCTTCTCATTCCTTTTCCCAACTATCTCAGTGGAAAATTAATTAAGCACACAGAGGCATATGCTGGTTATTC GTATCGACCTGGTTACTTACACAGATTTTTGTCTATGCCATAAGCCATATAACGACCAACCTTGTGGCATTGCCATTATTTGGGTAATTAGGTAGCTGAA ATTTGCTTGTCTTCGAATCCACATACATAGTTGTGACACTAACTTTCAGCAGTACCAGGTGTTGGGTGTTGAGGTTATTGAATTGGCATAATTGTATGAA AATGATTCCCCCAAAACTTTCAGCAGTACCAGGTTGTAAATTTAGTAGGACTTAATAATTTCTGTAGTTTTTTATATCATTAGACAATTGTATGAAAATG AAATTTTAACCAATGAAATAAACAGGTGATGCAAATTTGCCTTGTGGTAAAG
• Tissue: pods
• Gene name: LI_gene_172472;
• Additional information: details;

Expression of Ll_transcript_342257

FPKM

• PAB: 34.2
• PNAB: 7.4
• PS1: 12.5
• PS2: 10
• PS3: 15.9
• PW1: 9.1
• PW2: 13.5
• PW3: 15.7

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_342257

• Blastp: RING-H2 finger protein ATL52 from Arabidopsis with 46.67% of identity
• Blastx: E3 ubiquitin-protein ligase RLIM from Homo with 39.44% of identity
• Eggnog: zinc ion binding(ENOG41121N2)
• Kegg: Link to kegg annotations (AT5G17600)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019453130.1)
• Pfam: RING-H2 zinc finger domain (PF12678.6)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;