Ll_transcript_342261

• Id Trinity: TRINITY_DN49819_c5_g1_i8
• Name Transcript: Ll_transcript_342261
• Sequence: AAGATAAAAAAAGAAAAAAATAATCTACCAGAAAAATTAAAGAAAATCAGATAATTTGAAAAGGGTAACAGAAGAAAGAGAAAGAAAACCCAGGATGCAG AATATCTGAGTTTTTGTTGCCATAAATGTAAGAAAAGTTGAGGGAAATTTAGAGAATTGGTGAAGTTTCCATTGCAATGAACAAAACATAAAACAATCGT TTCATTAGTATCTCCGACATGGGTTCAGGTTCTAGTAGAGTTGGGTCTCCTCAATCATCTACACCCAGAGACAGGTTCAACCACACCCCTCGTTCTACAA CTTCCTCTTTTCTCCGCGGTTCCTCCACCTATCAGGTGGAAGAACATCCATCTGAACCTCAGGTAGATCCAGCAATAGAGTTTGATAATGAAATGTATAA AGTCACTGAGGAATCATCTTTATTGTGTACAGAAGCTAGAACTAGCCGCAGTACCCGTGCTGAAACTGCCACCTCATCTGATACCAGAACTGAGTTCTGT GGAAATGCTACTGTTGAAGGTTCTTCCAGAAATGTTGCAGCAGCTAGTCAGACGAAGTGTTTATCTGAATTCGAAGAGCTAGTCCCACCTTATCAGGTAA ATGCTGGTCATAATCACCATGAATCATATAGGGATATTAGCAACACAGCTAGTACTTCATCTGTAGAACAGCAATCTTCAGATCCAGTCTCTGTGAATGT TTCTTCTAACGAAGATGTAGTCAATGCTGTTGATGATCCAGTGGTTAGTGGTGGCTCTCAAATCTCTCGCGAGACAGTGCATCCAAGGAATTCCACCCCT CAAGAGCATGGAAATTCAAGTTCTGGTGAAATCTCTGTTGAGAATCACACAAGTGCTTTCATAGCTACCCGTGATTCTTCCAGTCCTGTTGCTCAAGCTT CAAACTTACCAGAAAATTCTCAACTACCAGAAGAAGAATCACGTCAGGAGACGATCCCTTCAGGTTTAGGTATTCTTGTGTCCAATCGGGAAAGAGGCCA GGGAAGTGATGGTGTGCTTCAAGTTGATGTGGTCGCAATATCTTCCAGCATGTTGTCTGGCAGCAATGCTGATGTCGATGATCATGATGTCAGAAGGAGT GGTAGAAGATTATTCTGGGATGCCTTTTCACGACGTAGTTCTAGAGGGCTTGGTGATTCTACGACAATGATCTTCTCTGCTGGTGGTGCCGATGATCCAG AATCTCGGGATCGATGGCTTGTTGATTTTGGTGGTGATTTCTCAAATAATAGGGTTCGAGGTCCTTCTGGCTATATGGGCAGTAGAATTCACAGATTGAA TGGACGAATGCGGCACTCAAGATCTGAGATATGGGAAAGGCTTCGTGGCGGCCTTGATGAGATTGGTCAATTAAATTCTTCCTGTCCACTAGGACTCCAT GCAGATGGTATGTGCTCATGTGACTCTTCCCCAATAGCTGAGGAATCTAGCACTCGAGCAAGTATTTATAGAATAGTCATGCTAGCAGAGGCTCTGTTTG AGGTTTTAGATGAAATCCATCGGCAACCTGTATCACTTTCCCTATCCATGGTCTCACTCCCTGCACCTGAATCAATTGTTGACTCTTTCCCTCTGAAGTC TCACAAGAAGGTTGATGCAGCTAATGGCAGCAATGACACTGAACAATGTTACATATGCCTGGCGGAGTACGAAGAAGGGGACCAAATACGAATTCTTCCT TGCAACCATGAATATCACATGATGTGTGTTGATAAGTGGCTTAAAGAAATACATGGTGTATGCCCTCTTTGTCGTAGCAATGTTTGTGGAGGATTAACGG AGTCTGCTGCCGACTCAGAAATGCCAACTCATTGATATTGTACACATGAATGTAAATATCCATTTCTTCAAATATATTTTATCCCTTGCCATGTTGCATA TAAAACAGCTTTTTAGAGTCCAATGTACAAAGTAAGATTTCGTATCCGAATCTTGTAATGCTTCCAAACAGTTACAGATTTTTGATTCTGTCATAATCCA TGTCATGACCATCTTGTGGCATTGCTGTTGTTTGGGTAGTTAGGTTGTTGAAATTGTATGTGTTCTGTAATCCTCGGGCATGGTTGTGGCATTGCCATGT TTGGGGAATTAGGTAGTCAAAATTGCTTGTGTTCTCAAATCTATGTTGTTACACTAGTTCTTGTCTCAGCGCAGTTCACACTATTGTGACCAACTGCTGT TGCATATCAGAAAAAACAAATCAT
• Tissue: pods
• Gene name: LI_gene_172472;
• Additional information: details;

Expression of Ll_transcript_342261

FPKM

• PAB: 4.6
• PNAB: 4.5
• PS1: 9.3
• PS2: 8
• PS3: 11.3
• PW1: 6.6
• PW2: 8.7
• PW3: 8.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_342261

• Blastp: E3 ubiquitin-protein ligase RLIM from Mus with 33.96% of identity
• Blastx: RING-H2 finger protein ATL32 from Arabidopsis with 44% of identity
• Eggnog: zinc ion binding(ENOG41121N2)
• Kegg: Link to kegg annotations (19820)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019441071.1)
• Pfam: RING-H2 zinc finger domain (PF12678.6)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;