Ll_transcript_342635

• Id Trinity: TRINITY_DN49839_c1_g1_i3
• Name Transcript: Ll_transcript_342635
• Sequence: GGCATACAATCCATTTTTTGCTACAAACAACCCTTGTATTTTTTCTCTCTCTCTCCCCAAGTCAGTTATGGCAGCCTCTGGTTCCTCTGAACAACCCAAG ATTGACAATATTATTTTCACCAACTATATCACTTCTCTGTTCTCTATGGAAAAGTTGGATGGTTGGTGAAAATAATATTGTCAATCTTGGGTTGTTCAGA GGAACCAGAGGCTGCCATAACTGACTTGGGGAGAGAGAGAGAAAAAATACAAGGGTTGTTTGTAGCAAAAAATGGATTGTATGCCCTAGAATATGGGTTG TTTGCATTGGAAGGGCTGCTGGACGTGAAACACACAGTAAACCGGAAAATGAAACACAGATCTGGGACCAAGAGGCCAAGGTGAGTCTTAAATAGCCAGA AAATGTTGTCGTAAAACACTACTGGAAAATGCTGCGGGAAAGTCAGCGGCGGTAGCTGGAAAACGCTGTCGGAAAGTTGGCAGCGGCAACTGCTAGAAAA CGTTACAGAACATGCCAGAGAAGAAAGAAAGGTTTAGGCTCTGATACCATGTTGAAAGAGATGAAGATGAAGAACGAAAACTCATCTTGTCTCTTAGGGT TTAGGAAATACAAGTATATAAAGAATGAAAATAGAGACTATGGGCCCTAACATGGGCCTTACTAAACTACAATATCAACACTCCCCCTCAAGTTGGGGCA TATAAATCATATGCGCCAACCGTGTTACATATATAACCCATCCGAGGAGCTCTTAGAGATTTAGTGAAGACATCCGCTAATTGATCATTGGAGTTGACAA AACTAGTGATAATATCTCCTGATTCGATCTTCTCTCTTACAAAATGACAATCTACTTCAATATGTTTAGTCCTCTCATGGAACACAGGATTTGAAGCTAT GTGCAATGCCGCTTGATTATCACATAGTAAAGTCATTTTCTTAGTCTCTCCAATCCGAAGTTCTTCAAGTAGATGTTTCAACCAAATGAGTTCTTGAGTT AGTAATCCCATGGCTCTATATTCAGCTTCAGCACTAGATCTTGCAACTACATCTTGTTTCTTGCTTTTCCATGATATCATGTTTCCTCCAACTAGTACAC AATATCCAGTAGTGGATCGCCTATCAATGGGTGACCCTGCCCAATCGGCATCTGAATAGCCAACAATTTGAGTATGACCCCTATCTTCATAAATAAGACC TTTTCCTGGAGCACCTTTAACATACTTCAAGATTCGTATCACTGCATCCCAATGATCTTGGCAAGGAGAATTTAAGAATTGGCTTACCACACTGACTGCA AACAAAATATTTGGGCGAGTGACTGTGAGGTAGTTTAATTTCCCAACCAATCTCCTGTATCTCCCTAAGTCTGAGAAAGGCTCCCCCTGGTTAGGTAGAA GCTTGACATTTGGATTCATAGGAGAGTCAACTGGCTTGACATTCAGTAAACCTGTCTCCTCAAGAATAGCCAAAGCATATTTCCTTTGTGAGATCACTAG ACCATCTTTGGATTGAGCCACCTCAATACCCAAGAAGTAACGTAGTTTGCCAAGGTCTATAGTCTGAAATTGATGAGAAAGATGTTGCTTTAACTGGATT ATGCCTTGTTGATCACTACCAGTTATCACAATATCATCCACATATACAATCAAGTAAATACATCCTTGAGTTGAATGGCGATAGAAAATCGAGTGGTCAT TACCACTTCGAGTCATACCAA
• Tissue: pods
• Gene name: LI_gene_172623;
• Additional information: -

Expression of Ll_transcript_342635

FPKM

• PAB: 0
• PNAB: 0.1
• PS1: 0.1
• PS2: 0.1
• PS3: 0
• PW1: 0
• PW2: 0.2
• PW3: 0.1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_342635

• Blastp: Copia protein from Sophophora with 35.62% of identity
• Blastx: Copia protein from Sophophora with 34.75% of identity
• Eggnog: -
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_020230207.1)
• Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) (PF07727.13)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;