| Id Trinity | TRINITY_DN49851_c0_g1_i9 |
|---|---|
| Name Transcript | Ll_transcript_342596 |
| Sequence | CTTATTTGTTACAACTTACAAGTATTTTTATCATAATTTTCCTAATAAAAACATACCAAAAGAAAATAAAAACCCAAGTAAAAGACATGCTATGAAATGT GAAACACAATCCCACATGCCTTGTCTTGAGCAATATCCATTCTTTGTACTTCTTTTTACTGACTAATAAAAGTTGAAATCAACCAACAGCCTGTCATTGT TACCTATATCTCCTTTCCTTTCTCAAGCTATACATACCAAGATGAACCACTATATTTGGTAAAACAAAACTTTTTACTTTATTAAAATATTTCACTTTCA ACTTCTTAAATGGATCATATCAACTAGGCCCTTTATTGAGTTTCATTGCTCTAGTTCTCACTCTCTCACTCTTTCTGTCTTCCCTGAGTTTTATGTTCAG CTTTCACTACATTATTCATATTCTTAGGTGGCTAACAAGGTATGTTTTATGTGGTTTGCGGAAGATTTCTTCTTTACATAACATAAAATCTTCTATCAAG GAAAAAAATCTAGCTCATTTATTTAGCTATCCACTTTATTTGGTATTAATATTCATTGAACCTATGGCATGTAGTGGTTTCAAGTAGCATACTTATTTAT TAATTTTTATGCATTTAGTTCCTTCATTATTTTTTGTTGGTAACCTTTGAGTGTAACTTCCTGTTTCCTTGGAATTACAACTTGACCTTCTGCTAGGTAG TTAGTTACTCATTAATTATGTATACTTAACCATATGATGCAGGATTGTTACTTTTTATTTTCTCCAAAAACAGGTACAAAAATATGTCTTGTGTTGTGTT GTATAGTAATAATTGACTATTTCTGTCTCTCTAGTTTTTCATAATTTCTATCAGTTGTCACTTTAAGACTTCGGAGTTTGGTTGTTGCCCTGAAATAAGA TAAAGCTATGCTTTCTTTAGTGCCTTTAATTGAAGTTTGGTTCAACTTCTTTTTCTATTAATGTCTAGTCTTGCTCACAGCTTTAATTTCCTATTATTGC TTTTTCATGCAATTGAGAAGGGTGAAACTGTGAACAAAACAAGAGGGAGTTTCTGAGGCACAAGTGCTGAAAAGTGTGTAAAGTCTTGTATTATGGACTG GAATTTGAAGTCACCTTCTTTGGATTTAACTGAAGTGGATCAAGGAACAACTTTTCCAAACATGGAAACAGTGGATGAAGGGTCAAGCAGGTTTGGTGTT TATAGAACAAAAAGTGATTTTTCTGTGGACTTGAAACTTGGCCAAGTTGGAAATTTTGGCATAGAATCAGTGATGGCTAAGCCCAAAGATACTTATGCTG CTGCTGGAGTATCAAAAATGTTATCTTCACCTTCAGGGTCATCTAAGAGAGCTAGAGCCTTTAACAATGGGAATCACATAGTGACATGCCTTGTAGATGA GTGCAAATCAGATCTTAGTAACTGCAGGGACTATCATAGGCGCCATAAGGTTTGTGAGCTTCATTCCAAGTCTCCACAGGTCACAATTAGTGGCCAGAAG CAAAGGTTCTGCCAACAGTGTAGCAGGTTCCATTCACTGGAGGAATTTGATGAAGGAAAAAGAAGCTGCAGAAAACGCTTAGATGGACACAACAGAAGGA GAAGAAAGCCTCAACCAGAACCACTCACGCGTTCTAGTAATTTTTTGTCCAATTACCAAGGTTAGCTTTAAGTTACTAGCTACATTATCTAAGTGGACCC ATGTGTGTCTATATTTGGACCATACATATGCTAAAGATCCCACATAGGTACATAAATATTATAAGGGTAAGATATAACTTAATTACATAATGCACTCACC TAGCTCAGTGCTCTGCCACCACCCCTTATTTGGTCCATTGATGTTCACACTCTTCATTATATAGTGGCCTCTAAAATAATGTCAGTACACTTATTCAAGA GAAAAAAATGTTTGCTTTTAAGATAGTGCAACAAGCTAGTCTATCATTTGGAAATAGGTTGTGTAGTATTGAAATAGTGTCATGTGTAATGCCTTGAGAT TCTTCTTACTTAGTTTGGACATAATTCCTTGACAATAGACACACATATAATGACAAAACCACCATTTCAGCCCTTGAATCTCTAAGCACTCGTGATCTTA GTTCTTTCTTTTGAAATTATCATTTTATTTCTTAAAATGTTAAGCATCAGTGATATTAGTCCTTAAAGTTGTGAACATTAATCATTGAATCCAGAGACCC TTTTTACCAATGAATCACAGTTTGGGTCTACAATGACCCTTTGTCGATCTCCTCTTGTATTGGGCGGGCACCCCTTATGCTCTGTCTAATTCGAAAAAAA CAAACCAATGTTCTCAAATGTATCTAGTATACATGTGAAAGTCAATGTCTAAAAATATACTAGTACATTTTTCAGGAACCCAATTGCTACCATTCTCAAG TTCACACATATACTCTTCCACTGCTATGGTGAATCCTGCATGGAATGGAGTTGTTACTTCCAGTGCAGATGTTAGGCTCCAAAACCAACACCAACAAGTG AATTTCATAGAAAAACAAGACCTTTTTCTTGGATCTTCCCCAACAAGCTACAAAGAAGGGAAACAACTTGCATTCTTACAAGGTGATCACAACCAAAACA CACATAATCTTCACACACTTCTCAGGACTAGCCCTTACTCAGAAAGTAGTGGAGGGTTAAGAAGCAAAATGTTCTATGATAATACCCTAACAAGTTCAGT TCATGAATCTCCTTGTGCTCTCTCTCTTCTGTCATCACCACAAGTACACAACAATACTGGAAATGGATTGAACCAAATGGTGCAGCCTCATTCATCATCA CTTATGCAACCCTTAGGGCTAAGCCTGCATGATAATAATAATAATAGTTTGGAGTCTGTGGACCCAGTTTTGGATCCTAATGGTAGTGATCATTGTTCAT CAATGTATAACATTGGTTCTAGTGGATCACAGGGGAGTGATGCACCTCAACTATTTCCATTTCAATGGGAATAGAGAATTTTATCATTAAGACTCACCCT TTTGTTGTTAATTTATAATGAATTCTTTCCCTAGGACTATTTTAATTATCATTTTATCTTGGATGGAGACTATGGTCTATCACATAAGGAAACATTGGTG TATTTAAATTATCATTTTCTCCGGTATTTGTTGCACTTTATTTGAATATATTTAAAGGAACACCGTGTCATTCCCCTCTCATCATAATAATTCGTATGTA CATATGCTTACAAGGTAAGAAAGTAATACTAACATGTTTATCTTCC BLAST |
| Tissue | pods |
| Gene name | LI_gene_172711; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_342596
| Blastp | Squamosa promoter-binding-like protein 13B from Arabidopsis with 54% of identity |
|---|---|
| Blastx | Squamosa promoter-binding-like protein 13B from Arabidopsis with 53.57% of identity |
| Eggnog | Squamosa promoter-binding-like protein(ENOG410YD0Z) |
| Kegg | Link to kegg annotations (AT5G50570) |
| CantataDB | - |
| Mirbase | bdi-MIR156j (MI0029151) |
| Ncbi protein | Link to NCBI protein (XP_019457641.1) |
| Pfam | SBP domain (PF03110.13) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |