| Id Trinity | TRINITY_DN49862_c1_g1_i2 |
|---|---|
| Name Transcript | Ll_transcript_343667 |
| Sequence | ATTTGCAACAAGGAGCGTGAACGCAAGTGACCCCATACTAATGTGTGGTGAGGAATCCCCGGTGTGTTTGATTATGTAACCTTTTATTGACCCTTCCTCT CAATGCAATAGAAGAAGATACCTTGGATATTGGAATCTTCTTCTTTTCTCTTCTCTTCTCTTATTTCTTCTTCACTTAATAATAACTTCACAACACAACA CAAGTACCGAAACCAAAACAAGACCAAAACCAAAACCAAAAACACAGAATGAGAGCTTTGAATTCTCATTTTGTGCTTATCGATTTTAACTGCTCCAATT ACGCTCCCACCTCAACTCTCACATATTTTAAGAAAAACTCCAACGTCATTTCCAAACTCTCTTCGTCATTTCATCGAACACGTCGTTCGGGTAAGGGAAT TCCATCCTGTAACTCCTCTTCCACATGGATTCCCTCGCCGGAGATTCGCCGGCCATCCGATCGCTTCCTTTCAGGAAATGGGTCGCCGGCGAATTCTCAA AGCACGCCCTCCACGTCGCGGCCCGAGTCCGCGACGGAGTTGGAGGTATTTCTGGAGTTGTTGCCTTTGAAGATGAGGAGAGAGTTATATAGGCATGATG AGATTGGAGGGTTGATAGAGGTTGTGATGGATCTTGGTAGAAAACCTCTTGCAAGGTTTCCTTCTGGTGATTGGGTGATTTCAGAACACCCCATCAAGCT TGAAGATTTATCCCATGCCATTTCAAAGGTAGTTTAATATGTTGGATAAAGATCACTTATCCCTATACTTCATCATCCAAATTTAGCTAATATAAAAATG TTAATTTTTTATTTTATTTATGTGTCAATATTTGATTGATCTAAGATATGTAATGAGATATCATTTGGGGAAAGGTGATCAGGCTCAACATTTTCTGATG TTTTTGCCCACTATAATAATGGTTGCACTTTTGTTATTTGTGAAAATAAAAGTAAGGAGAGTATGTGAATAAAAAAATATCATCTCATGCTACTTATTTA TCCCATTAACCATGAACATATTCGGTAAACAATCTGTTAGACTATTTAATACACATGTTTACACATGAATTTATACATCAATAATCAAAGTAGCCTAATA TAAGTGTTGCATTAAAAATAGGTGTCATGTCTTTTCGTATTCAGTTATACAAGAAGGAAGTAGTGTGAGAATGGTGCAATGAGTGTCGTGTAAAAAATAA CGTTACTACTTTTTTAGGGAAAAGTTGATTTACTACTTTTTGTATTTTTGAACGGTGTTGAAGTTCAAAATTGTACAAATAATATAATTCTTTTCTTAAA CATTTGGTGTTCTCTCTTTTTAGTAGTAATAGAATCACTTTGATTTGTTTATTTATAATATTTTAAATGGAAAATATAATCCAATTATCTGCTGTGAAAA AGTTGAAGTTGGGGCCAAAGGCCTAAAACCAGAATATTGAGAATGTGTAAGGATTTGTCTTTTTAATGAAGATTTGAAAGAACTCTTCTTTTTCCACTAT TACACAAAGATTGAGTACATCTCATACTCCCTAGAGCCTAGAATGGTGGGAGTTGCTCTTTACACGTTATAAATGGTCACAATTTGTCCTTTATTTTACT GTTGGTGCTAAATGCTAATGATTAATATCTTCATATATAAATAATTCTTCTTATTTTAGGTTGGTGAATTTTCTGATGACAACCGATCTGGTATCAATAG CTCTTTACATCGTATTAGTGCAATTCGGAATCGTAAGATGCAAATCATTGGCCTTACTTGCCGGGTAGGTCGAGCTGTAAATGGTAGTGCTGAAATCTTA CGTGATTTGGTTGAGGATGGAGGTTCTATTTTGGTAATAGGACCTCCTGGAGTGGGTAAAACAACCTTAATCAGAGAGATTGCTAGGATGCTGGCAGATG AATTCAGGAAGCGTGTTGTAATAGTAGATACATCCAATGAAATTGGAGGTGATGGAGATGTTCCTCATGCAGGCATAGGCAGGGCAAGGAGGATGCAAGT TCCAAACGTAAATATGCAGCATAATGTTATGATTGAAGCAGTTGAAAATCATATGCCTGAAACAATTATAATTGATGAAATTGGAACAGAGCTTGAAGCA TTAGCAGCCAGTACAATTGCTCAAAGAGGAGTTCAATTGGTTGGAACAGCACATGGAATGACCATTGAAAACATAATTAAAAATCCCTCTCTTCAAATCC TTGTCGGTGGCATAGAGAGTGTAACACTTGGGGATGAGGAAGCCAGGAAAAGGAAAGTGCAGAAAACAATTCTTGAAAGGAAAGGACCTCCTACATTTAT ATGTGCTGTTGAGTTGATATCTAAAACTGAATGTCGTGTTCATCATAGATTAGATGCAACCGTGGATGCCATTTTGGCAGGAAAATCTCCATTATTTGAA GTTCGTCAATGGGATGATTCTGCTAATGATTTGGTGAAGTATGCTCCAATGCCTGAAAAAAGTCACGGAGAAACACCTGATTTATCTAAAAATAATAACA CGAGTTCTGATATAGAGTCTGAGGAGGAAGATGAAGAACAACCTCCTACCCTGTCCAAAAAGCAGAGTACTAGTGAATCTATAATCAAGAGGAGTTCACC GGTGCAAGTGTATACTTACAAGATCATTGAAGCTGATCTACTACAAGTAGCAAAGGTGATGGGGCTTGAAGATTTAGTAGATGTAACTGATGACATTGGA GCTGCTGATGCAATTCTAGCATCCAGTAATGAGATGCGACAGCACCAATGGATCCGCAGTGTGGCAAAGTTCCACCAGTTACCTGTGTTTGTTATCAAGT CCAATACCATGGCACAAATGGTAAAGGCAATACGTATGATCCTTGGGTTAGAGTCATTTGGCCCTACATCAAAGAAGCCATTCAGTGACTCTCTCGATAT TGAAATCGACGATGATGAACCTAAACGAAAACCATCTCTGGAAGAGATTGATGCGTTGGAGGTACAAGCCCTTTCCGTTTATTTAATTAGTATCTGGTTT TTCTCCCTGAAAGTTCCATTATATGTGCAATTATTGTTTATGCTGTGTATCAGCAGTCTATCAATTGCTTTATGTTTGTGCCCTCTTGAAAGGTTGGCCT TTTCTTCTTTTCACATTTGGCAATTAAATTAGTATAACCAACTTATATTTTTTGTCCATTCATATCATATTAAATTATTGTATTTGACTTGGAGAAAAAC ACATTGCTGCCAATAAAGTGGTAAGGCCAAAAAACATTAACAAAAAGGTCATTGGTTCCATTACCAATGGTGGACATTGAAAGGTAGGTTATTTGTATCA TTAAGCTCTAGTTAATGCTTTTGGCATGCCCTGAATTTGGAACGTAGCAACCTTTCATTATAATTAGGGAATAAAGTATCTCCTTATGCAAGAAGATAAT TTATCTCCTTAAATCCATTTACTATTTGACATGTGTCTTAATTTTATTTTTATAATATATTTTAAAATGAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_172809; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_343667
| Blastp | Uncharacterized protein ycf45 from Porphyra with 46.95% of identity |
|---|---|
| Blastx | Uncharacterized protein ycf45 from Porphyra with 47.18% of identity |
| Eggnog | - |
| Kegg | - |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019441375.1) |
| Pfam | ATPase family associated with various cellular activities (AAA) (PF00004.28) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |