| Id Trinity | TRINITY_DN49868_c4_g1_i1 |
|---|---|
| Name Transcript | Ll_transcript_342736 |
| Sequence | TATACTTATGAGAATCTTTCCTTTTCCCGTCTCCTCCAAAAATCAACTCGCAAAGACACACCTAGGGTGTGATTGCGAATTGTTTCGGAAGGGAGGGAAG GATAGGAAAGGGTTTAAGAGTCATCACAATTGTATTTCATGGCTCGAAACCAACTCACAAACAAACGGACGCTCAGTGTTAGTTTGTGAGTTTGTTTTTT TGGAGGGAATATGCGAAGATGAGAGGCTTTCAGTGTCATATCACAAGTGTGTCTAATGACTCTGAAACCTTCTCTTTTCCTTCATTCCCCTCTGGAATGT AACTCGCAAACGTAACTCGGTGGCTAGGATGTCACCGACTCTAATAGGTGTGAGGGCTGCAGTATCTACCCTCCCTGATCTCGTTAAATGGGAGCCTCCT TTACAGGGACACATTTTTTCTATAAACTTTTGTGTGGAAACAAAACCTGTGTGTCACAGATTTTAATGATGATAGGAGGAGGAGGAGATAGGGAAGGAGC TGGCGGATGTAACCTTTGAAGAGTTGCAGAAAGCACGCTCAAATGGTGCACATGCATTTTTTCAGAAACCCAAAGAAGACCAAAAGTTGAAAAGGGCCAA CAAGAACAGGCCTATGGAGGCTAGCAGCAAGAAGCCAGTTGCTGCCTTTAGAGAGGTCATACAAGCTCCCAAGAAGGTTGTACGTGATCCACGATTTGAA TCTCTTTGTGGCACACTTGATACTGATGGGTTTAGGAAGAGATATAATTTTTTATTTGAAAGTGATCTTCCTGCTGAAAAAGAGGCTCTCAAGAAGGATT TGAGAAAATATAAAGATCCAGAGCGCATCCATGAAATAGAAGAACGTTTATCATGGATTGATAAGCAGTTGAAGTCTGGTTCCTCAAAGCATATTGATGC TAAGATATTGGCTAATCACAAGAAGAAAGAGAGAGAAGCAGCAAAGCAAGGAAAACGTCCCTTTTATATTAAAAAATCTGAAATCCGGAAGCAAAGGCTT GTTGAAAAATATAATCATCTCAAGTCATCTGGCAAACTTGAATCATTTGTTGAGAAAAGGAGGAAGAGGAATGCTGCAAAGGACCATAGATACATGCCAT ATCGTAGATCTGGTGACAACATGGAATAAGGTTGTTATATTTAAGGTTCTTTTCTATGCTAATAGCACTGGTAGATAGGGACCAAAAAAGAACATACGAA ACTGATGTATGTACCTTTTGTCTACCATATGTACCGTTTTTGAATATCAAAATGATAGTCCTTGTTGATGCCTAGGTATCACTTAATAGTAGGGGAGCAT GGGTCGGGTTAAGGCTTGTACCTTACCTGACCCTAAATATTTTGCATGAGTCATTTTTTGAACCCAAACCTAAACGTGAAGCTAACCCGACTCTAAATGT CGACAGAGTCAACTTTTAAATTCGACCCGACTCTAGACCCGATTAAATATAATGCATACTCATTTTAGCTAAAATCTTTTâBLAST |
| Tissue | pods |
| Gene name | LI_gene_172868; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_342736
| Blastp | Ribosomal RNA processing protein 36 homolog from Nematostella with 41.32% of identity |
|---|---|
| Blastx | Ribosomal RNA processing protein 36 homolog from Nematostella with 36.53% of identity |
| Eggnog | Component of the 90S pre-ribosome involved in the maturation of rRNAs. Required for early cleavages of the pre-RNAs in the 40S ribosomal subunit maturation pathway (By similarity)(ENOG4111T3E) |
| Kegg | Link to kegg annotations (NEMVE_v1g245966) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019431462.1) |
| Pfam | rRNA biogenesis protein RRP36 (PF06102.11) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |