| Id Trinity | TRINITY_DN49868_c4_g1_i6 |
|---|---|
| Name Transcript | Ll_transcript_342748 |
| Sequence | AGGTGTGAACAATTTCTCTCTATATCTTACCTTTTGTTTTGAATTCGATTCCGTAATTGGATTTGTTGATTCTCTCATCCCACGCTTTTGTTCTGATCAT ACCCTAGTTTCATATTTCTATTCTAAATTCACCTTCATCATGCTCACTATTCTTTTCTTACTTGATTTTTGCACACCAGTTGTTTGATAAATGTTCTGAC TCACAGATTTGCCAATTCCTACAATGCCATATCTGTTTTTTGTATCAATTTTTTTTACCAATTTTCATAAATCTTTCATGCATTCAAGATTTTTATTAAT CTTAGTAACTGGGTCGGCTATATGTATTGAACTATGTCATAAAGCTTTGTCATCTTAATTAACCATATTTTAACAAATTTTCATCTTTCAGTGGAATGAA ACAAAGTTGAGATTTGGATAAAGCAAGGATGCTCACTACCCACCCACCCTTATTGATTTTACCCAAAAAAAGTGAAGATGATAAGTAGCTAAATAGGTTG TTTGGAAATGATATGTAAAGCAAGAAAACAATTCCTTTTTTAGTCTCCATGCCGGCAGCCTCATGACACCTCAGCAAGACCACACCGGTAGCATAGCTTC GACTTTGACCTTTCCTTTTGCTCACTCGCTTTTTTTAATCCATAAAAAAGCTACCAACTTTGATTTGTTTCTGGGTAAGTTCTGGTGGCAATGCAATGAC ACACAACTGGGGTTGTTTTACTTGCTGGCCAATTTTTGCTATTTGACTTGAGTCTTCCATCTTTGGTTCTTTACTAATTATCTCACCTTTATGCTAACTT TGGTTGGTTGAGAAGGGGTTCAGGGGTTTTAAGTTTTAGCAGCACTAAGACCCATCAAATTCCTTAACTTGCAGTTAATTGATTTTTCTACATTTTCTTT GAAGCTTCAAGAATAGTATGTGCTGTTTATGGTTGTTACTTGTTCAATACTTTTTTTTGTTTTGGTTCAAACATAACTGTTGCGTTTTAATAAGTATTTT TTCTCTTTCAATTTTATGGTTATAGATAATGGTGTTGAACAATCAATGATTTAAGAACAACAATGTTGAAGTAAAAAGCATTTGTTAACAATAACATAGT TTGTGATCTAGGCCATAGTTGTAAGCCCATATTAAGTCTCAATGTTTTTACCACTGCTTATACTGACAACTATTGTGCCCTCTTCTTGGTCCATCCTGTT TGGGTTTGCACAATTGCAGTCCTCTTTCAACTTTCTCATTTCTTCTCACAATTCGCACAAGAGAATAAAGTATCCCCTTACACCATGAGATAATTTATCT CCTTAAATCCATTCATTGTTTGACATGTATCTTATTTCTCTTCTTTCTATGAGTTTTTATTTTAAAATATATTATAAAAATAAAATTAAGACACATGTCA AATAGTAAATGGATTTAAGGAGATAAATTATCTCCTTATATAAAGAGATACTTTATTCCCTTTGCACAAAGTAATCTTGAAATAACACCAACTTTATCAT TACTTTTTTCTGTAGCTCGATAGATCAAAATTTGTCAAAATGACGAAATACAACAAAAGTGGAATCGCAGGTTCCAGCGAACCCCAGTACGAGCAGAGTG AGATGGACAGCTCTTCTTCTAGTTCCTCAGAAGATGAGGAAGAGGAGATAGAGAAAGAGCTAGCTGATGTAACCTTTGAGGAGTTGCAGAAAGCACGCTC AAATGGGGCACATGCATTTTCCAAGAAACCTAGAGAAGACCAAAAGTTGAAAAGGGCCAACAAGAATAGGCCAATGGAGGCTAGCAGCAAGAAGCCAGTA CCTGCCTTTAGAGAGGTCGTACAAGCTCCTAAGAAGGTTGTACGTGACCCACGCTTCGAATCTCTTTGTGGTACACTTGACACTGATGGGTTTAGGAAGA GATATAATTTTTTATTTGAAAGTGATCTTCCTGCTGAAAAAGAGACTCTTAAGAAGGAATTGAGAAGATATAAAGATCCAGAGCGCGTCCATGAAATAGA AGAACGTTTATCATGGATTGATAAACAACTAAAATCTGGCTCAGCAAAGCATATTGATGCTAAGATATTGGCTGATCATAAGAAGAAAGAGAGAGAAGCA GCAAAGCAGGGAAAACGTCCTTTTTATATTAAAAAATCTGAAATCAGGAAGCAAAGGCTTATTGAAAAATATAAGCATCTCAAGTCATCTGGTAAACTTG AATCATTTGTTGAGAAAAAGAGGAGGAGGAATGCTGCAAAGGACCATAGATACATGCCATATCGTAGATCTGATGACAACATTGAATAAGGTTTTTAGCT TTATGGTTCTTTTGTATGCTTATAATAGAGGGAGATTGCATCAAAGAAAAGGAACAGAAAAAACTGGTATATGCATTTGTCTTCCATATAATCCCTTTTC GAAAACCTTAAGTGTTTGTTTTGTTTGGAAGTTAGATTTTGAAGAGAAAGGGAGAGATAATGAAAGTTTCAGAACCATGAAATACATACACTTTTGGGAT GATTATGAAGTCTTATCTTTAAGGTTTCAAAACCATGAAATACATTTGTGGGATGACTGTGAAGTATATTCTCTTTCTCTTTATTCCCATTCAAAACACA ACTAACAAACTCTAATCGATAGTTCATTGTGGATAAGATTATATGCAATTTTGTCTATTTTGCAAGATTTACTATGCACTTGTATGGAAATGGGTAACAT CCCAATATTTGGAGTTGAGAACAGGTCCTCCAACATTTTAGTTATTTCATTTAGTGCAATATTAATAG BLAST |
| Tissue | pods |
| Gene name | LI_gene_172868; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_342748
| Blastp | Ribosomal RNA processing protein 36 homolog from Nematostella with 36.65% of identity |
|---|---|
| Blastx | Ribosomal RNA processing protein 36 homolog from Mus with 39.71% of identity |
| Eggnog | Component of the 90S pre-ribosome involved in the maturation of rRNAs. Required for early cleavages of the pre-RNAs in the 40S ribosomal subunit maturation pathway (By similarity)(ENOG4111T3E) |
| Kegg | Link to kegg annotations (NEMVE_v1g245966) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019431463.1) |
| Pfam | rRNA biogenesis protein RRP36 (PF06102.11) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |