Ll_transcript_342754

• Id Trinity: TRINITY_DN49868_c4_g1_i8
• Name Transcript: Ll_transcript_342754
• Sequence: AGGTGTGAACAATTTCTCTCTATATCTTACCTTTTGTTTTGAATTCGATTCCGTAATTGGATTTGTTGATTCTCTCATCCCACGCTTTTGTTCTGATCAT ACCCTAGTTTCATATTTCTATTCTAAATTCACCTTCATCATGCTCACTATTCTTTTCTTACTTGATTTTTGCACACCAGTTGTTTGATAAATGTTCTGAC TCACAGATTTGCCAATTCCTACAATGCCATATCTGTTTTTTGTATCAATTTTTTTTACCAATTTTCATAAATCTTTCATGCATTCAAGATTTTTATTAAT CTTAGTAACTGGGTCGGCTATATGTATTGAACTATGTCATAAAGCTTTGTCATCTTAATTAACCATATTTTAACAAATTTTCATCTTTCAGTGGAATGAA ACAAAGTTGAGATTTGGATAAAGCAAGGATGCTCACTACCCACCCACCCTTATTGATTTTACCCAAAAAAAGTGAAGATGATAAGTAGCTAAATAGGTTG TTTGGAAATGATATGTAAAGCAAGAAAACAATTCCTTTTTTAGTCTCCATGCCGGCAGCCTCATGACACCTCAGCAAGACCACACCGGTAGCATAGCTTC GACTTTGACCTTTCCTTTTGCTCACTCGCTTTTTTTAATCCATAAAAAAGCTACCAACTTTGATTTGTTTCTGGGTAAGTTCTGGTGGCAATGCAATGAC ACACAACTGGGGTTGTTTTACTTGCTGGCCAATTTTTGCTATTTGACTTGAGTCTTCCATCTTTGGTTCTTTACTAATTATCTCACCTTTATGCTAACTT TGGTTGGTTGAGAAGGGGTTCAGGGGTTTTAAGTTTTAGCAGCACTAAGACCCATCAAATTCCTTAACTTGCAGTTAATTGATTTTTCTACATTTTCTTT GAAGCTTCAAGAATAGTATGTGCTGTTTATGGTTGTTACTTGTTCAATACTTTTTTTTGTTTTGGTTCAAACATAACTGTTGCGTTTTAATAAGTATTTT TTCTCTTTCAATTTTATGGTTATAGATAATGGTGTTGAACAATCAATGATTTAAGAACAACAATGTTGAAGTAAAAAGCATTTGTTAACAATAACATAGT TTGTGATCTAGGCCATAGTTGTAAGCCCATATTAAGTCTCAATGTTTTTACCACTGCTTATACTGACAACTATTGTGCCCTCTTCTTGGTCCATCCTGTT TGGGTTTGCACAATTGCAGTCCTCTTTCAACTTTCTCATTTCTTCTCACAATTCGCACAAGAGAATAAAGTATCCCCTTACACCATGAGATAATTTATCT CCTTAAATCCATTCATTGTTTGACATGTATCTTATTTCTCTTCTTTCTATGAGTTTTTATTTTAAAATATATTATAAAAATAAAATTAAGACACATGTCA AATAGTAAATGGATTTAAGGAGATAAATTATCTCCTTATATAAAGAGATACTTTATTCCCTTTGCACAAAGTAATCTTGAAATAACACCAACTTTATCAT TACTTTTTTCTGTAGCTCGATAGATCAAAATTTGTCAAAATGACGAAATACAACAAAAGTGGAATCGCAGGTTCCAGCGAACCCCAGTACGAGCAGAGTG AGATGGACAGCTCTTCTTCTAGTTCCTCAGAAGATGAGGAAGAGGAGATAGAGAAAGAGCTAGCTGATGTAACCTTTGAGGAGTTGCAGAAAGCACGCTC AAATGGGGCACATGCATTTTCCAAGAAACCTAGAGAAGACCAAAAGTTGAAAAGGGCCAACAAGAATAGGCATGTTACGCATGTTGCATTGCAGTTATAA AAAATGCAAAGAATTGTGAAAAATATTCTGATAATGTGGTCACAGTGCCGGGGCTGTGTAGACCACCAAAACTGCAATTCCTCCTTGTTCAAAGTGATTA ACCTTGCACCCTTTGGGTGTGGAGATATTGTGGGAAGCAAAATGATTGGTTTTCTTGTTTCCAAGTAACACATCAAAATAACTGATTTTTGTGTTTTCCC AGGCCAATGGAGGCTAGCAGCAAGAAGCCAGTACCTGCCTTTAGAGAGGTCGTACAAGCTCCTAAGAAGGTTGTACGTGACCCACGCTTCGAATCTCTTT GTGGTACACTTGACACTGATGGGTTTAGGAAGAGATATAATTTTTTATTTGAAAGTGATCTTCCTGCTGAAAAAGAGACTCTTAAGAAGGAATTGAGAAG ATATAAAGATCCAGAGCGCGTCCATGAAATAGAAGAACGTTTATCATGGATTGATAAACAACTAAAATCTGGCTCAGCAAAGCATATTGATGCTAAGATA TTGGCTGATCATAAGAAGAAAGAGAGAGAAGCAGCAAAGCAGGGAAAACGTCCTTTTTATATTAAAAAATCTGAAATCAGGAAGCAAAGGCTTATTGAAA AATATAAGCATCTCAAGTCATCTGGTAAACTTGAATCATTTGTTGAGAAAAAGAGGAGGAGGAATGCTGCAAAGGACCATAGATACATGCCATATCGTAG ATCTGATGACAACATTGAATAAGGTTTTTAGCTTTATGGTTCTTTTGTATGCTTATAATAGAGGGAGATTGCATCAAAGAAAAGGAACAGAAAAAACTGG TATATGCATTTGTCTTCCATATAATCCCTTTTCGAAAACCTTAAGTGTTTGTTTTGTTTGGAAGTTAGATTTTGAAGAGAAAGGGAGAGATAATGAAAGT TTCAGAACCATGAAATACATACACTTTTGGGATGATTATGAAGTCTTATCTTTAAGGTTTCAAAACCATGAAATACATTTGTGGGATGACTGTGAAGTAT ATTCTCTTTCTCTTTATTCCCATTCAAAACACAACTAACAAACTCTAATCGATAGTTCATTGTGGATAAGATTATATGCAATTTTGTCTATTTTGCAAGA TTTACTATGCACTTGTATGGAAATGGGTAACATCCCAATATTTGGAGTTGAGAACAGGTCCTCCAACATTTTAGTTATTTCATTTAGTGCAATATTAATA G
• Tissue: pods
• Gene name: LI_gene_172868;
• Additional information: details;

Expression of Ll_transcript_342754

FPKM

• PAB: 0
• PNAB: 0.3
• PS1: 0.2
• PS2: 0.1
• PS3: 0.1
• PW1: 0.1
• PW2: 0.2
• PW3: 0

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_342754

• Blastp: Ribosomal RNA processing protein 36 homolog from Nematostella with 43.27% of identity
• Blastx: Ribosomal RNA processing protein 36 homolog from Nematostella with 43.35% of identity
• Eggnog: Component of the 90S pre-ribosome involved in the maturation of rRNAs. Required for early cleavages of the pre-RNAs in the 40S ribosomal subunit maturation pathway (By similarity)(ENOG4111T3E)
• Kegg: Link to kegg annotations (NEMVE_v1g245966)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019431463.1)
• Pfam: rRNA biogenesis protein RRP36 (PF06102.11)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;