| Id Trinity | TRINITY_DN49873_c0_g2_i6 |
|---|---|
| Name Transcript | Ll_transcript_341416 |
| Sequence | GGCAAAACTTAAAACTAAAACTCTCTTTCTTCCCCAATCAATCTTAAAAGGGTTGAGAGGGTTGAATCTTGTACCCTTGTTTCTACCCAAACGGTGCAAT TCTTATTAACAACCATGGCTTCGTGGAAAGACGCAGACCCTTCCCTAGGGTACCTTACCCGTAAGGACACGGAGGTGAAGCTTCCACGAGCAACTAGGGT TAAAAACAAAACCCCCGCTCCTGTTCAAATCACCGCCGAGCAGATTCTTCGTGAGGCACGTGAGCGTCAAGAATCTGAGATTCGCCCTCCCAAACAGAAG ATCACCGATCCCACCGAACTCGGCGAGTATCGTCTCCGAAAGCGGAAGGAATTCGAAGACTTAATTCGCCGAGTTCGATGGAACATAGGGGTTTGGATCA AGTACGCTCAGTGGGAAGAGTCGCAGAAGGATTTCAAACGCGCTCGATCCATTTGGGAACGAGCGTTGGAAGTTGATTATAAGAATCATACGTTATGGCT CAAGTATGCTGAGGTGGAGATGAAGAATAAGTTTGTTAATCATGCTAGGAATGTGTGGGACCGAGCGGTTACGCTATTGCCCAGGGTTGATCAGTTATGG TATAAGTACATTCATATGGAGGAGATGTTGGGAAATGTGGCCGGTGCGAGGCAAGTTTTCGAGAGATGGATGAAGTGGATGCCTGATCAGCAGGGTTGGT TGTCTTATATTAAGTTTGAACTTAGGTACAATGAGGTCGAGCGCGGAAGAGGAATTTTTGAGAGATTTGTACAATGCCATCCCCGTGTTGGTGCTTGGAT TCGGTATGCTAAGTTTGAGATGAAGAATGGTGAGGTTGTGAAGGCACGGAATGTTTATGAGAAAGCATTGGAGAAGCTCGCAGATGACGAGGAAGCAGAG CTGTTATTTGTTGCTTTTGCTGAGTTTGAGGAAAGGTGTAAGGAGACGGAGCGTGCAAGAGCTATATATAAATTTGCACTTGATCATATTCCCAAGGGAC GGGCCGAAGATTTGTATCGCAAGTTTGTAGCCTTTGAGAAGCAGTATGGGGACAGGGAAGGGATCGAGGATGCTATTGTTGGGAAGAGAAGGTTTCAGTA TGAGGATGAAGTGGGAAAAAGTCCAACGAATTATGATTCATGGTTTGACTATATAAGATTGGAAGAGAGTGTGGGGAATAAAGAAAGGGTAAGGGAGGTT TATGAGAGAGCTATAGCCAATATTCCTCCGGCTCAGGAGAAGCGGTTATGGCAGCGCTATATCTATTTGTGGATTAACTATGCACTCTATGAAGAGCTTG ATGCTGGAGATATGGAGCGAACTAGAGATGTATACAGGGAGTGTCTCAATCTGATACCTCACCAGAAGTTCTCATTTGCGAAAATATGGCTACTAGCAGC CCAGTTTGAAATACGCCAGCTGAATCTCAAGGCTGCCCGTCAAATATTAGGAAATGCCATTGGGAAGGCTCCTAAAGATAAGATTTTTAAGAAGTATATA GAGATAGAACTGCAGCTTGGTAATATAGATCGATGTAGAAAACTGTATGAAAAGCATCTTGAGTGGTCGCCTGAAAATTGCTATGCTTGGAGCAAGTATG CAGAATTAGAGAGATCTTTAGCTGAGACGGGTCGAGCTAGAGCAATATTTGAAGTTGCAATCGCCCAACCAGCATTGGACATGCCTGAGCTATTGTGGAA GGCATACATTGACTTTGAGACTGGTGAGGGTGAATTTGATAAAGCAAGAGCACTTTATGAAAGGCTTCTTGATCGAACAAAGCACTTGAAGGTATGGATG AGCTTTGCAGAGTTTGAGGCAACGGCTATTAATAAGGACGATTTAGACGTAACAGAAGAAGCACTTGAACAAAAGAAGCAATGCATTCAGCGTGCCAGAA GGGTGTTTGAGGAAGCTCTCAAATACTTTAGATCGTCAGCTTCAGATTTGAAAGAGGAAAGAGCAATGTTATTGGAGAAATGGCTCAACATGGAGGCAGC TGAGTTTGGGGAGCTGGGTGATGTTAGCTTAGTACAGTCTAAGTTGCCGAAGAAGCTCAAGAAGAGAAGGCATGTTACTACCGAAGATGGATCTACCAGA ATTGAAGAATACATCGACTATTTATTCCCCGATGAAACTCAGACAACAAATCTAAAGATCTTGGAAGCTGCATACAAATGGAAGAAGCAAAAATTGTCTT CTGGTGATGATTAGCTGTAGCTCCCATGCTTCTAGCATTTATACATGTGCAACATTTGTTGTTTCTTCTTTAACTAGCAAAAATTGGAGCTCCATCGGGT AAGTTGTTTCTGGGCCTTCAACATTTGCTGTAGAGAACCTCACGGAGTAACTTCTACTTTCTTAAAAATTGTAATTCAAAAAGGAGAAAGTCATCTCTTT TGAGTTATGTTAGTTAGTTAGTTAGTTAGTTTTGTTTTAGGGTAATGGAAGGAAAAGGAAAAGGAAATGATACTCTCATCAAAAGCCAATTGTTGGGTGC ATATATTACGAGTTTATAACTACTGCATTACAATGTTGCATGCTTAGAAACGTAAGTTAATTTACCTTTTGGCCAATATACGTTACTTAATATAAAATGC ATTTATCCATTCTTTTA BLAST |
| Tissue | pods |
| Gene name | LI_gene_172902; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_341416
| Blastp | Crooked neck-like protein 1 from Rattus with 60.15% of identity |
|---|---|
| Blastx | Crooked neck-like protein 1 from Homo with 60.29% of identity |
| Eggnog | crooked neck pre-mRNA splicing factor-like 1 (Drosophila)(ENOG410XQJF) |
| Kegg | Link to kegg annotations (100910202) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019420965.1) |
| Pfam | HAT (Half-A-TPR) repeat (PF02184.15) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |