Ll_transcript_343883

• Id Trinity: TRINITY_DN49876_c1_g1_i1
• Name Transcript: Ll_transcript_343883
• Sequence: CTAAATTCAAACTCTATCTTCACCGTTCCCATCTCTTCTCTCTCTCAACTTCTTCTTCCTTACTTTCACTCTGATTTCTCACTCATTACAATCACATATA GATTTTGCTAATTATCTCGATAATCTTCTCTTTATCCAAAAAATCTCAATATCCTTCATTTTAATGTATAATAGGGTCTGATGTATAACTTTTTGTACAA TAAACTTGTCACATAAAAACATATAAGGTCCTAATGTATTATATTTGCTTATACTGTCATGACTTATATGACATGCCAAACAGACTCATAGGGTTTGCGT GAGTTGAGTGAAGCTGGAAAATTTAATATGATCTCTATTATTGAGCCTTAGCAATGTTTTATGTTAGTTGTCGACTACCTAAAATAACTTTCACATTTTA ATATGGCTTACGATTGTCTATGTATAACATGAAGTACATATAGGTATAACATTTGGTACCTTCACCTAGTTCTTCAGCTTACATTTGCCTTTGAATCTCC TTCATGCTAGACAAACATACCTTCTTTCGAGCTTTAGCAGATTGTAAAAACGAATAGAAAGAGTATTACTTAAACTGATGTGGAAAAATGTGATTCTCCC AAGGAAACATGTTTAATGATACCCCATTTTGAAGCTAGCGTTAAGTTACAGTACTTGTTCAAATTATAACATTGCATTGACTAGTACTTTCTCTCTTGTT ATTGAAAGCAATGTCTTTGTTTGCGTGTAGGTTAGCATTTTAAATCAAGAAGCCATGATTGAACAGATAAAGTCAATGGTTGAATCAAGATTGAGAAGTT CCGATGAGGCACAGTCCTTTGAAGAGCAGCAAACTGCTAGGCTATCTTCTCCGTCTCAAATTAATACCAGCATGAAGGCTAACCTCAACTCTAAGGCAAT GGAATCCAGATCAAAGAAAGTGGCAGTACATACGTTGGTCAGAACAGATTCGTCAGATCTTACTGGAAGATTACATGCCTGTGGTCAAACCAAGTTTGAT GGACATACCGAAAACGGTGCTTGTTCGAATGCAGTAAGGTCCTCAGCTAGTCCAAGTAGTTACCCAAAGACCGCTGCAGATCTTACTAGCGTTCAAGAGC TTCTTGCTGTGATCAATAACGACTGTGACCCAGCTATGATGGACATTGTCAGGCACTGCACATATATTGGAATGACAGATGATGTTTTTGTTGTGCTTCA GCATCATACTCATCTTTATCTTGCGAATGTTGTAAACTTGAGCAAGGAGCTTATGTATCAGCAATTTCTGAGCCGATTTGCCCACCACAATGCAATATGT ACAAGTGATCCACTCCCCTTGAAAGACTTGATATTGTTGGCACTGAAGGAAGATGATATAGATTTAGAAGTTAATGATGATGACAACCTCAATGAGAAGA CTGCTGAAATGATGTCGGAACTGCTAAAAGAAAAGGCTGATATGCTGGATGAGTTCTTTGGCATTAATATTGACGAACACGGAAATATTTGTGGACTTCC TGTGATACTTGACAAGCATACTCCTAATATGGATCACATCCATGAGTTTGCGCTTTGTTTAGGCAATGATGTTAGTTATTTTTTGTGTGTCTCCTCTCTT CATCTGTTTTTGAATAGTTATTTATTTAATTATCATTCCGTTGAATTCATTTTCAACTGAATATTGAAGTTTGTGCTAGTTGATATCCAAGACTTCCATA ATATTTGTTGACAAGGCCCTTTCCCCGCTTGTTTATGGTAGGTTGATTGGGAAGATGAAAAGAATTGCATTGAAGGAGTTTCAGTTGCACTGGGATATCT CTATGCTGTGCATCCACCAATGTTTCCCAATCCGTTTGGTGACGGCCTGCTTAATTACTTGAAGGTTAACCAGCTCGAGCGTGGTACCTTTGATAGGACT GGTCTTGATGCTATCAACAATAAAGTGGAACATGGCATGCCTTCTCATCCTAAGAAAGAATGGACAAAGTATGAATGGAAAATACAACACTTTGTTTTTC CTTCTTTGAGAAACTTTTTCAAACCACCTGTTTCTATGGCTACTGATGGAACCTTTGTTAAGGTAAGGCATATATGTTTCTCTTCCATTTTTTTCAATGA GTTGTTTATGTGATCATAGTATACGTTGTGTTCTATCAAAAGCCATGTCTTACAATTTCAGGTAATCTATTTTTTTTGTTTAAATTTTATTATATGCCCT AATTAATGTAGGTTCTTTTGTTCATTCAAATTTGTAAGTGTATATCTTGCTTAGATGTTTAGTTTATATATGAGCCAAGAGATACATTAAGGCTCAATTA CTAATCTTTGTGAAGAGGGAGGATACAACAACATATTGGGTGGAGTCAACTACATCAATCGAATAATATCATAATACCCTATCGTAAATTATGTTCATTG ATAGAATATTTGATCTTTAAATTTTTGTTAATCGTTTCATTTATGTTTTTCCTTGGCCTCCCTATTCATCTAAAATTGCATTACTCCACACATGTGCAAA TCATCCAAGATGCAGTTCTACGATATTTTCTATAATAAGAGTTATTCTAACTTTCTCCATAATCGATTCATTTCTAATCTTATCTTGTCTAGTGTGTTCA TTCATCCATCACCATCATTGGAGAGAATGAACAAGCTTTTGGGAAGATGTTCAGTCATTCCTCTTTCTTCAACTTTCACCATTTGACTAATGAGACTTTA CAATGGCATTTTCTGTCCATATATTTGATTAAGAGAAGTATTTTAATTTGCACTATTATTGATTTACGTATTTTTTACAGGTAACTTCATTGGAGAGAAT GAACAAGCTTTTGGGAAGATGTTAGACATCTTTTTGGGATTAATGATAGTAGTTATGTTATATGTTGTGCATTGAAAAATCTAAGTTCCAACAATTATCA AAACTATGCACATTGCCAAAATTGCTGTTATTATTTTGTTGCATGTAGCCACTAGCCACGTACTATCACATTACTTTTTTTTGTTTACAAAGTTACTAAA CTTTGGCCCACTTTTTGTCAAAAAAATGAGGCTATGTTACTACTTTCTTAAGTCGTTTTGTTCTATTTTAGTTAATGTCTTTTTAAACATTTTATCCCTC C
• Tissue: pods
• Gene name: LI_gene_172925;
• Additional information: details;

Expression of Ll_transcript_343883

FPKM

• PAB: 1.8
• PNAB: 0
• PS1: 0.1
• PS2: 0
• PS3: 0
• PW1: 0
• PW2: 0
• PW3: 0.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_343883

• Blastp: DNA mismatch repair protein MLH1 from Arabidopsis with 51.99% of identity
• Blastx: DNA mismatch repair protein MLH1 from Arabidopsis with 43.62% of identity
• Eggnog: This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex (By similarity)(COG0323)
• Kegg: Link to kegg annotations (AT4G09140)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019440186.1)
• Pfam: DNA mismatch repair protein Mlh1 C-terminus (PF16413.4)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;