| Id Trinity | TRINITY_DN49876_c1_g1_i18 |
|---|---|
| Name Transcript | Ll_transcript_343905 |
| Sequence | TGTCATAAGTCATATTTTTTGTTCCCTCACTAAACCAGGGGATACAACTTTATTCAGTGCAAAAAAAGTGCTGTGAGATCCCTTGGATGAGCCCTTGATG AATTTATTTTCTTATCTAAAGAATAAATGCTAGTACTAGTTGTAGACTTTCAGAACCGAGCTGTACTTGTGCTCTAAATTAGCAAAAAAAGTTGGCCAGT GCATGAGGCTCTCACTTATTGAGGTATGGGGATTAGCAATGGGAATTAAATTTGTATTGTGCTTCTGTTAACAGGTTGAGAATTTATTCTATAACATGAC TGCAAGGAAGAAGACACTGCAAAATTCTGCTGATGATTATTCGAAAATTGTAGACTTAGTAAGCAGATTTGCTATTCATCACAATAATGTTAGTTTCTCT TGCAGAAAGCATGGAGCTACCAGAGCAGATGTTCATACAGTTGTCACATCTTCAAGGCTTGACGCCATCAGATCTGTTTATGGGGTCTCGGTTGCTCGTA ATCTGATCAAACTTGAAGCTTCAGACAATGGTCCATCTTCTTCAGTTTTCGAGATGCATGGTTTCATGTCAAATGCCAATTATGCTGCCAAGAAAATCAC TATGGTGCTTTTCATTAATGATAGATTGGTTGAGTGGTCTGCATTGAAGAGAGCTATTGAGATTGTTTATGCAACAACATTGCCCAAAGCATCTAAACCC TTTGTATATATTTCAATTGTTTTGCCACCTGAGAATATTGATGTCAATGTGCATCCGACAAAGAGAGAGGTGAGTGTTTTAAATCAGGAAGCTATCATTG AACAGATACAGTCAGTGATTGAATTGAGATTGAGGAGTTCTGATGAGGCAAGGACATTTCAAGAACAGACAGGGAGGCAATCTTCATCGTCTCAAATTAA TACAAGCAAGGAGGTGATCCTTAGCCCTAAGACACCAGGATCTCGATCACAGAAAGTGCCAGTACATAAGTTGGTTAGAACAGATTCATTAGATCCTGCT GGAAGATTACATGCTTACGTACAAATGAAGCTTGATGGACATATTGAAAAGTGTTCTAGTTTGAACGCAGTAAGGTCCTCAGTTAGACAAAGAAGGAACC CAAAAGGTTCCTTAGATCTGACTAGTGTTCAAGAGCTTCTTGATGAGATCAATAACAAATGTGACCCAGGCATGATGGACATTGTAAGGCACTGCACGTA CATTGGAATGGCAGATGATGTTTTTGCTGTCATTCAACACAATACCCATCTTTATCTTGCGAATGTTGTAAACCTGAGCAAAGAGCTTATATATCAGCAA GTTCTGAGCCGTTTTGCCCGTCTCAATGCCATAAGTATAAGTGATCCCCTCCCCTTGAAAGACTTGATTATATTAGCGTTGAAGGAGGAAGATTTAGATT CAGAATGTAATGATGTGGATCACCTCCAAGAGAAGATTGCTGAAATGAACTCAGAACTGCTGAAACAAAAGACTGAAATTATGGATGAGTTTTTTAGCAT TTACATTGACAAACATGGAAATGTTGCTACCCTTCCTGTGATACTCGACCAGTATACTCCTGACATGGATCGCATCCCTGAGTTTGTGCTTTGTTTAGGC AATGATGTTGATTGGGAAGATGAAAAGAATTGCATTCAAGGAGTTTCAGTTGCTCTGGGGAATTTCTATGCTATGCATCCACCAATGTTGCCAAATCCAT CTGGTGAGGGCTTGCTTTTCTACAAGAAGAGAAAAGTGCTAGACAATTGTACCAAGGAAAATGCATGTGATAGTACTGGGAGCAATGTAGAGAATGATAA AGTTGATCACGAACTGCTTTCTGAAGCCACAACTGAATGGGCTCAGCGCGAGTGGACAATACAACATGTGCTTTTTCCTTCCATGAGACTCTTTTTCAAA CCACCTGTTTCTATGGCTACTAATGGAACCTTTGTTAAGGTAACTTCATTGGAGAGACTGTATAAGACATTTGAAAGATGTTAGGCAACCACATAGATTT TGAGACTGTATAACTCATGCTACTTAAATGTATATACCAGGTAGTGGTTACTTTTCCCAAAATTATCTTCACGCATTTCAAGTTTTCTTATTCAACTCTG AATTCTGTACTCTGTACTCTTGTCCTTTTATATATTTCAAAACTGGTATTGTACAAATCTTACTAGTCCAATACAATATTAATTCAAAATAAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_172925; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_343905
| Blastp | DNA mismatch repair protein MLH1 from Arabidopsis with 65.84% of identity |
|---|---|
| Blastx | DNA mismatch repair protein MLH1 from Arabidopsis with 66.26% of identity |
| Eggnog | This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex (By similarity)(COG0323) |
| Kegg | Link to kegg annotations (AT4G09140) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019441032.1) |
| Pfam | DNA mismatch repair protein, C-terminal domain (PF01119.18) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |