Ll_transcript_343979

• Id Trinity: TRINITY_DN49880_c2_g1_i7
• Name Transcript: Ll_transcript_343979
• Sequence: AAATTAGATAATTTATACATGGTATAAAGATTATGTTTCTTATTTCTCTTCCTCACTCTCTTTAAACCAACACATTCCTCTCAATAACAATAACAATTCT ATGCTCCAAAGGTTGAGATTTGTACACTCTTCTTCTCTTCTCCATCATCATCATCATCACCTTTTACACCAACCCACTAAATCAAAATCTCATTTCTACA ATTACCAATACTACCCTTTCTCAATTCCACCTCTCAAAGTGTTCTCAATGGCCACGTCATCATCTTCATCTCATTCTCATAACTATACTAATCGACTTGT TTCAGAACAAAGCCCTTATCTTCTACAACATGCACATAACCCAGTTGAATGGTATCCATGGGGTGAAGAAGCTTTCTCTATAGCACGCAAACGAGATGTA CCTATCTTCTTATCAATTGGGTACAGCACTTGTCACTGGTGTCATGTCATGGAGGTCGAGTCTTTTGAGGATGAAGGGGTTGCCAAGTTGTTGAACGATT GGTTTGTAAGCATTAAGGTGGATAGAGAGGAGCGGCCTGATGTTGATAAGGTATACATGACGTATGTGCAGGCTTTGTATGGTGGAGGAGGTTGGCCCCT CAGTGTGTTTCTTTCCCCTGATTTGAAACCTCTAATGGGTGGAACTTACTTCCCCCCTGATGATAAGTATGGAAGACCGGGATTTAAGACTATACTTAGA AAGGTAAAGGAGGCTTGGGATAGTAAGAGGGATATGCTAGTTAAGAGTGGAGCGTCTGCAATTGAACAGCTTTCTGAGGCATTGTCTGCTAGTTCCATTT CCGATAAGTTGCCTGATGGAGTTCCGGAGGAAGCATTAGGCCTATGCTCAGAGCAGCTCTCTGGGAGCTATGATTCAAAGTATGGTGGGTTTGGATCTGC ACCGAAATTTCCCAGACCAGTTGAGATCAACTTGATGCTTTACCACTCCAAAAAATTGGAGGATACTGGGAAGTTGGGGGAAGCTAATGGAAGTCGGAAA ATGGTTTTCTTTAGCTTGCAATGCATGGCAAAAGGGGGCATTCATGATCATATTGGAGGGGGGTTTCACAGATATAGCGTGGATGAGTGCTGGCATGTTC CACATTTTGAGAAGATGCTGTATGATCAAGGGCAGCTTGCAAATGTTTATTTAGATGCCTTTTCTATAACAAAAGATGCTTTCTATTCATGTATAGCACG AGATATCCTTGATTATTTGAGGAGAGACATGATCGGTCCAGAAGGTGAAATTTTTTCGGCAGAGGATGCTGACAGTGCAGAGTTTGAAGGAGCTGCAAGA AAAAAGGAAGGAGCCTTTTACATATGGACCAGCAAGGAGGTTGATGACATACTTGGAGACCATGCTGCTCTTTTTAAGGAGCACTATTACATAAAGCAGT CGGGTAACTGTGATCTGTCTAAAATGAGTGATCCTCACGATGAATTCAAGGGAAAGAGTGTGCTGATTGAGAGAAAGGATGCTTCAGAAATGGCAGAAAA ATATGGCATGCCAGTTGAGACATATCAAGAAATTCTTGGAGAAAGTAGGCGTAAGCTGTTTGAAGTAAGATCAAGGCGGTCAAGACCACACTTGGATGAT AAGGTTATTGTATCTTGGAATGGACTGGTAATCTCATCATTTGCTAGGGCTTCTAAGATTCTCAAGTGTGAAGCTGAAGGGACCAAATTCAACTTTCCTG TTGTTGGCACTGAAGTATGTTTTTCCCTTTGCTAATATCGTCATGTTGTTAGAGAGCCTTTGATATTTTATTTTAGCTGGATGAATAATATTCAAAAAGA TGGTAGACACTTCTATTTTAGATTATGGATCTCGCCTCTAGAAGATACCTTTGAACTATCATCATAAGCATACAATTTTATACTGTTGATCACAATTCTT GTTTCGGACAAGGAGTAATTTCTGAGTTAGCAGGAGTATGAGGCATAACGAATAGTGGGTGAAGATGTTGGAGGAACAACTGGAGCCAACTTGGCTCTTA TTTTTTGAGTAATT
• Tissue: pods
• Gene name: LI_gene_172960;
• Additional information: details;

Expression of Ll_transcript_343979

FPKM

• PAB: 2.4
• PNAB: 0.8
• PS1: 0.9
• PS2: 1.6
• PS3: 0.5
• PW1: 0.4
• PW2: 0.4
• PW3: 0.8

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_343979

• Blastp: Spermatogenesis-associated protein 20 from Homo with 46.57% of identity
• Blastx: Spermatogenesis-associated protein 20 from Homo with 47.02% of identity
• Eggnog: mannose-6-phosphate isomerase activity(COG1331)
• Kegg: Link to kegg annotations (64847)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019419202.1)
• Pfam: Protein of unknown function, DUF255 (PF03190.14)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;