| Id Trinity | TRINITY_DN49888_c1_g1_i6 |
|---|---|
| Name Transcript | Ll_transcript_342355 |
| Sequence | CTCTGCCTATCCCTTTCCCATTTTCTTGCAACTCTTCCATCCTAAGTTCCTAACCATACTCTTCTCACATTTCCCTTCTTCTACTTCTACTCTTGCTCAA TGAGCAACACCAAACAATTCTTTGCGAGAGTCAGAGATTCCGACAAAATGAAACAAATCTTTGCCGGAATCTCTGACCCCAACAAGAATAAGAAGAAACT CCTCTTATCTCTCTTTGCTACTCTTCTTCTTGTTGCCTCAGTTATTGCCATTGGTGTTGGAGTTAACTCTCACAAAAACTCACACCATTCCCACACCATA ATCAAAAGCGCATGCAGCTCCACATTCTACCCTGAACTATGCTTCTCAGCTATATCCTCTGAACCAGGCGTTACTCACAAAGTTTCTACCCACAAAGATG TCATTGAATTGTCCTTAAATATCACCACAAGAGCCGTTGAACACAACTTCTTCATCTTAGAGAAGCTCTTAACAACAGAAAAGGGTCTCTCAAAGAGAGA GAAAACTGCACTCCATGATTGCTTGGAGATTATAGATGAAACCCTTGATGAATTAAAAGAAGCTCGTGATGATATAAGATTGTATCCTAACAAGAAAACA TTGTATCAGCATGCTGATGACCTTAAAACCCTTATAAGTTCTGCCATTACTAACCAATTCACTTGCTTAGATGGTTTCTCACATGAAGATGCTGATAAGA AGGTGAGGACGGTTCTGGAAAAAGGGCTTGTTCATGTGGAACACTTGTGCAGCAATTCATTGGCTATGACAAAGAACATGACTGATAATGATATAGCCAA CTATGAACAGAAGATGGTGGTGGTGGGAAATAAGAACAGGAAGCTCATGGAGGAGGAGGAGACCGGGGTCAAGTGGCCGGAGTGGATTTCAACCGGAGAT AGGAGGCTTTTACAGGCGACAACAGTGAGGGCAGACATAGTGGTGGCAGCAGACGGCAGTGGGAACTTCAAGACGGTGTCGGCTGCGGTGGCTGCTGCAC CTGAGAAGAGTAGCAAGAGGTTTGTAATCAGAATTAAGGCTGGGGTGTATAGAGAGAATGTAGAGGTGCCAAAGAAGAAAACAAATATAATGTTCTTGGG TGATGGTAGAACTAATACTATCATCACTGGTAGCAGAAATGTTGTTGATGGTAGCACAACCTTTCACTCTGCCACTGTCGGTAAGTTCGTTAATTTAGTT TCATTTTGCACACACTAACTAATTCACTGTTTCTTCGAACAAAGAAAAAATGAGTCTAATAGAGTAATAGTTATATACTAAAGTTTTATTTACTAATATG ATGAATGATTACTTTTGTGAAAATGGTAGGTGATATATATTTAAGTAGATATATATCAATTAAAATATATAGTTTCGTGTTGATTTTACGTATATATTAA CCACTCTTTTAATTTTTCAAATGAGAAAACTAAATTCGTTTATTAATTTCTTAAATTATTATAAATAAACTCATTCTTATAACCAAATTAATCCACACGT TGAGGAGAATAAGATAGAAAACTAAAAAGGTATTTGGATAGGTTGTAAAGTTCTGAACATAATATTCAACTATATGAATGGAGTGTACTTTTTTAAAAAA GTTTGTTAATTTATAAAAGCATAAACACTTATAAATTATGCTAAAGAACAAATCCATGTTTCACAAAGGGAATGCTCTAATGGAAAGAAATATAAAAATT CTGGGTCACATCATAGTATTATCCTAATTTTCACTATAATTAAAAAAATCTATTTCTTCAAACAAAGACCAAATAGATATCATTGTCAATCAAATGAGTC AGCATGCACATGGTTTCTTCTGACTTCTCAGCATAAACATCTTTCTCTCAAATGCTTCGTCCTTTTCTACTCCTGTTTTTTTAGGCCACTTCTAATATGC GAATCGTAAATTAGTTCGCTTCCATGCGAACTCTATATTAACC BLAST |
| Tissue | pods |
| Gene name | LI_gene_173030; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_342355
| Blastp | Pectinesterase/pectinesterase inhibitor U1 from Lycopersicon with 62.64% of identity |
|---|---|
| Blastx | Pectinesterase 3 from Citrus with 63.01% of identity |
| Eggnog | pectinesterase(COG4677) |
| Kegg | Link to kegg annotations (544016) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019430276.1) |
| Pfam | Plant invertase/pectin methylesterase inhibitor (PF04043.14) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |