| Id Trinity | TRINITY_DN49915_c1_g1_i19 |
|---|---|
| Name Transcript | Ll_transcript_457700 |
| Sequence | CTTTGCCTCTCATAATGAACATATTTTTCCATATTAAATCTTGTGTGTTAATTTTTTCGCTATTTTACTAAAAAAAAGTTTAATTATTAATTGATCCGAT CTTGTGATTCTGGGTCGAGTTTATATATTCCTACTTTTGAGCACTTTACCCCTTTGTTACATTACAGTACAAGCTCTCTCTCTCTCTCTCTCTCTTCAAC AATGGTGGAAACGATGCTCCTTCCATTCTAAAACCCTCCAACGTTGATTTCCTAATCATGAACGTTGATCACAACCAACCTCACACAAATTCACACACCC TACAAACCCTAACATCAGCTCCAATTTCCTCTTCAATTTCAAACCTCTCTTCTTCTGATCGTGATTTCAAATTCTATCGCAATTTCAACGAATTCAAGCT CCCTGTTAACGAAATCTCGAAGGAATCACAGTTTATGCTTCAATCAATCGGTGCTTCAATCGCGAAGGATTCGACTTTTCCTGTTGATATAGACGAGGCT TATGATTGGGCTGTGAATGTAAACGACGACGTTTTGGAGCGGTTTGATATCTCTGCTGACGAGTTTCGGAAGGTTAGGATGGATGAGGAGGAAGGGGTGG TTCGGGAAGAGGCGAATTCGGCTATGGAAGATGATGGTTTTACGTTGGTTTGTAGGAATAAGAAGAAGAATGGAGGGAAAAATTGTGATTCTTTGGAGAG AATGGTGATTGATTCGGAGACAAGTGTTAAGGTTGCAATGAAGGATAAGAAGACGATTGGGCCGAAATCGAAGGTTCCGTTTCATATACCGACGATTAGG AGGCCTCAGGATGAGTATACCATAATGGTTAATAATTCAAACATGCCTTTTGAGCATGTCTGGTTGGAGAGAAGCGGTGATGGTCAGAGGGTTATTCATC CATTGGAGAAACTCTCTGTTTTGGATTTTGTTGATAAAGATCCCGGGAATGTTGTGCCAGTGAAACCTCCCCCATTAGAGAGCACCCCTTTCAGGCTTGT GGAGGATGTCAAAAGTTTGAAGGAGTTGGCTGCTAAGCTGCGTTCTGCTAATGAATTTGCGGTTGACTTGGAACATAATCAATATCGATCTTTCCAAGGT TTGACTTGCCTGATGCAAATCTCAACAAGGACTGAAGATTTTGTTGTAGACACTTTGAAACTTCGCGTTCATGTTGGGCCCTACCTAAGGGAAGTGTTCA AAGACCCTGCCAAGAGGAAGGTCATGCATGGTGCAGATCGAGATATTGTGTGGCTTCAACGAGATTTTGGCATTTACATTTGCAATCTGTTTGACACTGG TCAGGCTTCAAAGGTGTTAAAATTGGAGAGAAATAGTTTGGAGTATCTTCTGCGTCACTTTTGTGAAATTGCTGCAAACAAAGAGTACCAGAATGCAGAT TGGAGAGTACGACCTCTTCCAGATGAGATGCTAAGATATGCCCGAGAAGATACACATTATCTTATGTATATGTATGATTTGATGAGGATTAATTTATTTG CCTTGTCTAAGGAGTCTGGAAGTTCTGATGATCCTCTGTTGGAGGTTTATGAGCGCAGTTATGATGTCTGCATGCAGCTCTATGAGAAAGAACTTCTGAC CGAGAACTCCTACCTTCATATATATGGGTTGCAAGGAGCTGGTTTTAATGCTCAGCAGCTTGCCATTGTTTCTGTAAGTTCCACTTTAATTTCTTATGTG CAGTACCATTCATTGGGTAGCTGCACATGGAACAAATGCTTGCCTGGTTTTCTGTTCCAAAACTTTTTTTCAGTGCATATGGAAAATAGTATTCACCAAG CAATCCTTTAGATAAGAAATCTTATGTGAATTTTGAAGAATTTTGTCATTTCTGTTATCATTATCAAGAATTTGTACCTTGTTGAAGATTTCAATTAAGA TCTCTAATAATCAATTTACCTCATGGAATTTTTTGGATTGATTTCTTTACGTAAGTCTCTTTAGTTTATATGAAGTCAGGTTTGCTCCTATAGTCTTTCA ACCGAGGAAGCACAAACACTTAACAATAGTCATCTTGTCCAACTGTCCATGTCAGACACATATATGTGTCTGACACTTTCTGACCCTCCTGATTATATTT ACAACATTCATATTTAGTTTTTAAGTCTGTATACCATTATTATCACTATAGATGGAAATATCACAATAATTAGATAAAAAAGAGCATTTTATGATGCTAA ATATGACTCATGCTAACTTTTAAAACATCATTCATCTCTTTTGATATAAAATTTGTGGTTTTATGTTACTCTTCTGTTAATTTTATATCTATACCAAACT ATCATGTCCTATAATGTTTAAAAGTTGTCGTATCCCCATGTCTGTGTCATGTCATATCTTTGTCCAGTGTTTTATCGGTGCTTCCTTGGTTTTGACATCT TCCCACTGCCATATCCTTGCCATAGTGTAAATTGTGGCTACTATTGCTTCCATTTGTAACCACCTTCATTACTGTCTGCATTACCTTTGCATGAATATCT TTATAATAGTGCTGCAGTGTTCTAGCTAGTGTGCTATCATCTCAACCACCACTAAGCACTTTCACATTATTTACCTTGATGAAGTGTATTGGTTTATATC ATGAATAATGGTTTCGGTTCTGTTCAAAGAAACTCTAGTGGCCTTCCAAGTTCCAAGAATGCTTATCCTATATACCCTATAATAAAGAAATGTCCAACTT CTAAAACTAATAGAATATATTGCATTCATTTTGGATTTCTGTGCTTTCAAAACTTGTTACACTTAGGAGATTGAGTTATAATCTGTTAGGTAACTCCTAG TCAGTTAGTCAGAAATATTTTATTGAGTTATTTAGGGGCTTGGGATAGCTAGAAAGTTAGGCACATTGCCTGTAAATAAGAGGGGGTTAGAAAGGTGAGG ATATCTTGTCATTTGTAGAGAGAATTGGGGCCTTTGGGCAGAGGGGAGGTTCAGACCCTCAAAGTTCTGCAACATCACTTGTAATCTTGGGGAAGTTTTC CCTGCTTCTAAGCAATATCATACCAGGTTCTTATATACTCATATTTATATGGTTTACAGGGTCTTTGTGAATGGCGGGATGTTGTCGCACGTTCAATGGA TGAGAGTACTGGATATATACTGCCAAATAAAGCTGTTCTTGAAATAGGTAAATGAAAAACTTGTGCAAATTTCTGTACCATCTTTTCTCTATGTTAGCAT TTTAGTTGTAAGGTACATGCCAACTTAATTTATATTTGTCTGTTTAAAAGCTAAGCAGATGCCTGTGACTACAATCAAACTACTGCGTTTGGTAAAGTCA AAGCACCCTTTTGTTGAACGCAATCTTGATAGTGTTCTCGACATCATTAAGCATTCTATTCAAAATGCTGCTGCCTTTGAAGAAGCTGCTCAGCAATTGA GTGAAGGAAATGCTTCTACTTCATCAGATGTTGTACCGGTTAAAGATAGAACTGAAGACCCCCAACTCCATACACAAGACTCAAAGGAATCCTCTCAGCA TCAAGATATAAATGTTCTAGTAAAAATTAAGTCCCCTAGTTTCACATTCTCGAAAGCAAAGGAAAATCGAGCAAGTATTGACGTGCTAAAAAAGCCTACT GGTGCTTTTGGGGCACTGCTGGGGAGTTCAGCTTCCAAGAGGAAGCTTAATCTTGAAAACAAGGATAACGAAGAAATCAAGCTAGAGCAGATTAGATCTT CAGTCAATCTTCCTTTCCATTCATTTTTGGGTGGCAGTCAGGTATCAAAACCTGTTGTTAAAAGTCCTAGTTTGGCATCGGGAACATCGAACCCACAGAA ACCTGTTCCAGTTCATGTTTCCACCTCCACTTTAGATGAGATTATAATCCTGGAGTCCGATACTACTGTGGAGGATATGGAGCAGAATAATATAGAAAAC TGTAATGATCACGGGGAGATAAATTCCAACGTGTCCACTTCGGGAAAAGAGGACGAAGTTGAGGCAATGTCTCTTTCCGAATTGTCATCGAGTTTTCAGA AGTGCTTTCAGTCAAACAATCAACATAACAAAACAAGGCTGCTCAAGAAAACTGAACAAGTTGGTGGCTTATTGCAGCTGAAGCCATTTGATTATGAAGA GGCAATGAAACATGTTAAGTTTGGAGAAAACAAAAAACATGCATCATTCCAGAATGATGGAAATGCGGGACAAGATGACTCGGGTAGTAAGAAGAAACAT TCAACAACAGTACAGGAACAAACAACTGATTTGACAAAACAGTTGCAGCAAGGTAGAAGACGCCAGGCGTTTCCAGTGTCTGGGAATCGAAGTTCAACGT TCCGCTGATACAACGAAATCGATGCTATGTATGAAATATTGTATTTAGCATCCTCTTGAATCAAAGTTGATATATAAATAGAATGATTTTCCTTCTGTTT ACATCTCTTGGTTACAAATTTGGGAACTTTGTTGAGTGAGTAGTAATTTATTTTTTCATTACCCTTTTTGGCCTGATCAGCTGCAGTATTAACTTATAGT TCCCACTTGGCATATATGAATGATTAAGAAAACTCGAGGGAACATAGAATCTAGAAGCAACTGAATTGTATCATAATTTGGCCAAATCTAATTTGCTCTA TAAAGAGCCGTTACCATAGTTTCTTATATGGTGTCC BLAST |
| Tissue | pods |
| Gene name | LI_gene_173247; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_457700
| Blastp | Protein RRP6-like 2 from Arabidopsis with 62.21% of identity |
|---|---|
| Blastx | Protein RRP6-like 2 from Arabidopsis with 63.09% of identity |
| Eggnog | Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides (By similarity)(COG0349) |
| Kegg | Link to kegg annotations (AT5G35910) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019442868.1) |
| Pfam | PMC2NT (NUC016) domain (PF08066.11) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |