Ll_transcript_457707

• Id Trinity: TRINITY_DN49915_c1_g1_i25
• Name Transcript: Ll_transcript_457707
• Sequence: CTGGAATGGCTGGCTCATTGAGTCTCGGCGCAACAGTAAGGTTGCCTCTTAGTGACCAAGAGGTCACAAGTTCAAATTCTGGAAACTACCTATCTGCTTG TGGTTGTAACTGTGTAAGGCTAAGTACATCTATCCTCCTGGACCCTATTAGATGGGAGTCTCGTGCGTTGAACCACCTTTTCTTAACTGGAATTTCCCGT AACCTACAGGTTTATGAGCGCAGTTATGATGTCTGCATGCAGCTCTATGAGAAAGAACTTCTGACCGAGAACTCCTACCTTCATATATATGGGTTGCAAG GAGCTGGTTTTAATGCTCAGCAGCTTGCCATTGTTTCTGTAAGTTCCACTTTAATTTCTTATGTGCAGTACCATTCATTGGGTAGCTGCACATGGAACAA ATGCTTGCCTGGTTTTCTGTTCCAAAACTTTTTTTCAGTGCATATGGAAAATAGTATTCACCAAGCAATCCTTTAGATAAGAAATCTTATGTGAATTTTG AAGAATTTTGTCATTTCTGTTATCATTATCAAGAATTTGTACCTTGTTGAAGATTTCAATTAAGATCTCTAATAATCAATTTACCTCATGGAATTTTTTG GATTGATTTCTTTACGTAAGTCTCTTTAGTTTATATGAAGTCAGGTTTGCTCCTATAGTCTTTCAACCGAGGAAGCACAAACACTTAACAATAGTCATCT TGTCCAACTGTCCATGTCAGACACATATATGTGTCTGACACTTTCTGACCCTCCTGATTATATTTACAACATTCATATTTAGTTTTTAAGTCTGTATACC ATTATTATCACTATAGATGGAAATATCACAATAATTAGATAAAAAAGAGCATTTTATGATGCTAAATATGACTCATGCTAACTTTTAAAACATCATTCAT CTCTTTTGATATAAAATTTGTGGTTTTATGTTACTCTTCTGTTAATTTTATATCTATACCAAACTATCATGTCCTATAATGTTTAAAAGTTGTCGTATCC CCATGTCTGTGTCATGTCATATCTTTGTCCAGTGTTTTATCGGTGCTTCCTTGGTTTTGACATCTTCCCACTGCCATATCCTTGCCATAGTGTAAATTGT GGCTACTATTGCTTCCATTTGTAACCACCTTCATTACTGTCTGCATTACCTTTGCATGAATATCTTTATAATAGTGCTGCAGTGTTCTAGCTAGTGTGCT ATCATCTCAACCACCACTAAGCACTTTCACATTATTTACCTTGATGAAGTGTATTGGTTTATATCATGAATAATGGTTTCGGTTCTGTTCAAAGAAACTC TAGTGGCCTTCCAAGTTCCAAGAATGCTTATCCTATATACCCTATAATAAAGAAATGTCCAACTTCTAAAACTAATAGAATATATTGCATTCATTTTGGA TTTCTGTGCTTTCAAAACTTGTTACACTTAGGAGATTGAGTTATAATCTGTTAGGTAACTCCTAGTCAGTTAGTCAGAAATATTTTATTGAGTTATTTAG GGGCTTGGGATAGCTAGAAAGTTAGGCACATTGCCTGTAAATAAGAGGGGGTTAGAAAGGTGAGGATATCTTGTCATTTGTAGAGAGAATTGGGGCCTTT GGGCAGAGGGGAGGTTCAGACCCTCAAAGTTCTGCAACATCACTTGTAATCTTGGGGAAGTTTTCCCTGCTTCTAAGCAATATCATACCAGGTTCTTATA TACTCATATTTATATGGTTTACAGGGTCTTTGTGAATGGCGGGATGTTGTCGCACGTTCAATGGATGAGAGTACTGGATATATACTGCCAAATAAAGCTG TTCTTGAAATAGCTAAGCAGATGCCTGTGACTACAATCAAACTACTGCGTTTGGTAAAGTCAAAGCACCCTTTTGTTGAACGCAATCTTGATAGTGTTCT CGACATCATTAAGCATTCTATTCAAAATGCTGCTGCCTTTGAAGAAGCTGCTCAGCAATTGAGTGAAGGAAATGCTTCTACTTCATCAGATGTTGTACCG GTTAAAGATAGAACTGAAGACCCCCAACTCCATACACAAGACTCAAAGGAATCCTCTCAGCATCAAGATATAAATGTTCTAGTAAAAATTAAGTCCCCTA GTTTCACATTCTCGAAAGCAAAGGAAAATCGAGCAAGTATTGACGTGCTAAAAAAGCCTACTGGTGCTTTTGGGGCACTGCTGGGGAGTTCAGCTTCCAA GAGGAAGCTTAATCTTGAAAACAAGGATAACGAAGAAATCAAGCTAGAGCAGATTAGATCTTCAGTCAATCTTCCTTTCCATTCATTTTTGGGTGGCAGT CAGGTATCAAAACCTGTTGTTAAAAGTCCTAGTTTGGCATCGGGAACATCGAACCCACAGAAACCTGTTCCAGTTCATGTTTCCACCTCCACTTTAGATG AGATTATAATCCTGGAGTCCGATACTACTGTGGAGGATATGGAGCAGAATAATATAGAAAACTGTAATGATCACGGGGAGATAAATTCCAACGTGTCCAC TTCGGGAAAAGAGGACGAAGTTGAGGCAATGTCTCTTTCCGAATTGTCATCGAGTTTTCAGAAGTGCTTTCAGTCAAACAATCAACATAACAAAACAAGG CTGCTCAAGAAAACTGAACAAGTTGGTGGCTTATTGCAGCTGAAGCCATTTGATTATGAAGAGGCAATGAAACATGTTAAGTTTGGAGAAAACAAAAAAC ATGCATCATTCCAGAATGATGGAAATGCGGGACAAGATGACTCGGGTAGTAAGAAGAAACATTCAACAACAGTACAGGAACAAACAACTGATTTGACAAA ACAGTTGCAGCAAGGTAGAAGACGCCAGGCGTTTCCAGTGTCTGGGAATCGAAGTTCAACGTTCCGCTGATACAACGAAATCGATGCTATGTATGAAATA TTGTATTTAGCATCCTCTTGAATCAAAGTTGATATATAAATAGAATGATTTTCCTTCTGTTTACATCTCTTGGTTACAAATTTGGGAACTTTGTTGAGTG AGTAGTAATTTATTTTTTCATTACCCTTTTTGGCCTGATCAGCTGCAGTATTAACTTATAGTTCCCACTTGGCATATATGAATGATTAAGAAAACTCGAG GGAACATAGAATCTAGAAGCAACTGAATTGTATCATAATTTGGCCAAATCTAATTTGCTCTATAAAGAGCCGTTACCATAGTTTCTTATATGGTGTCC
• Tissue: pods
• Gene name: LI_gene_173247;
• Additional information: details;

Expression of Ll_transcript_457707

FPKM

• PAB: 0.2
• PNAB: 0.2
• PS1: 0.1
• PS2: 0.4
• PS3: 0.3
• PW1: 0.5
• PW2: 0
• PW3: 0.4

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_457707

• Blastp: Protein RRP6-like 2 from Arabidopsis with 39.5% of identity
• Blastx: Protein RRP6-like 2 from Arabidopsis with 38.37% of identity
• Eggnog: Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides (By similarity)(COG0349)
• Kegg: Link to kegg annotations (AT5G35910)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019442868.1)
• Pfam: HRDC domain (PF00570.22)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;