| Id Trinity | TRINITY_DN49927_c2_g3_i1 |
|---|---|
| Name Transcript | Ll_transcript_457576 |
| Sequence | TTTCTCTTTGTGTATGACTTAAATTTGCAATATTAAATTGGGTTAGATTCCTCCACTACTAACTCCCACTCCACCCACCAAACCAAACCAAAGAAAGAAT GAGTGAGGAAGATACATACATAGAGAGTTAGAGTGAATGTAGGTATAGCTTTAATCTCACATAATAAATATCCAAAATTTACACCCCTATCTATTTCTAC CTTAATTCTCAAATTCCAGGCGAGCAAAGGAAACGGTGTCTGCGTATCCATATTTCCAGGGCATCTGAACTTAAGAGAGAGGCTGGTTCGTGGAGGCTGT GGGATTTCTGCAAGCTTATGGTGCTGTTGGAGGTTTCTTTTCTCAAATCTTGCATGTAGAACTAACTCATTTTATTTAACTAGTTGAAGACTGGGGAAAA GAATTCAAGTTAAATAAAGATATCGGGAAGCTGCAATGGGTTCTGTTTGTTGTTGTTTCAGTTTTGACGATTTTGAAGATTATGTAAATCCAAATAGTTC TGTGTATAGGAACTGTGTGTGTCTCAGTTGCTTTATACAGAACCTCTTGACTGTGGTATGTTTCTAAGTTCTATCTCCCTGCCTCTCTTCCAGTTTATTT CATTTTCCCTTCTTGATTCATTGAAGGGCAATGCTCTATCTCATGGCTCAATGCATTGGTTTTAACTGGTTTTTGTTAGCATTGGTGTGCACCTCCATCT TCTCTATTGTTTCTTCGTTTCGGTATATCTTGAAAAATTACACAAGTTTTTACGTGTGATGCTGGAAATAACGTGTTTGGTGATCTGCTTTCAGTATCAG TAGTCTTGAACTATGTCTCCTAATCCTCAATATTTCTCAGATGGTGATGTGTTGATTTATAATCACCTATTGTTTACTCTAGGAAATATATTTTGCATTT GTTAATCTAATTATATAAGCTTCTTGGTGGTAAATCCACTGATTGCCATTTACATTAATATTCGGTGGGACTGTGACTTGAATGTTTTAATCCGAAATCC AATTTTCACGAATCAGGATGATGTATCTTGACATTGATAAAAGTGATATAGTATTATATAACCATTTTCCTATGTACCACATAATTTCAGTATGCAGCAA TATTCCGTAGAGGGGAAGTGCATTCAGTTCCTTCATCTCTTCAAGGTGCAGCATCCATGTCTTCTACAGCATCACTTGACAATTCTCTATCTGACATGTA CCGTTCTCCTCCAAGGCCCTTACCTTATGATGCAGAACCCAGGTATTTCCGCTCAAGGCGTGAGAAGGGTTCAAGTCATTTGAATGAGGAATCCGAACCT CTGAGAAGTGATGTAGATATGGACCTAGAATCTTTAAGTTCAGGAGACAAATGGAATGAATGTGCCGGTGAAGATGGAACAAAGGAATATTGTTCCAAGT CCTCACTAAAACTTTCATCAGCAAAATATACAACTGGAGTTGGGCTTGTCTATGCATCGTCAGAAGAGGAGGATGTCTGTCCAACTTGTCTCGAAGAATA CACCAAAGAGAATCCGAAAATAATGACCAAATGCTCTCATCATTTTCATCTTGGTTGCATTTATGAGTGGATGGAGAGGAGTGACAGTTGTCCAGTTTGT GGAAAGGTGATGGTTTTCGACGAAACCCTTACTCTCGATTAATAGGTTTTGCTTGGTGGATTAAGCCAGCAACAGAAAAAAAAGGAAGAATGAACATAGT ATAATGATTGTGAATACTGCACAGAATAAGTGCTTGTTTTGTATAGTTAAGTGTGAAAAGTTTTCTTCACCATTGTTGTGAGTCCTCACTCTCATCCAAG TTGTTTTTATGTTGAATGTTGAGTTTCCTCCATGAAGGAAAAAAGAAAGAAAATGGAATTTTATATGGAAACCTTGTCATTGCTTCAAAATGTTGATATA TTATTGTTTCTTTGTGGTATAAATAAGCATGTTCATTCAATGTGGAACTGAACTGATCATGACTTAGAAAACTATTAATTCAACATCAGAATCATTATTG TACGGGAGGGATCAAGTTACTCGTAGACTTACTCCTCATCCTAACCATCA BLAST |
| Tissue | pods |
| Gene name | LI_gene_173352; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_457576
| Blastp | E3 ubiquitin-protein ligase At3g02290 from Arabidopsis with 62.11% of identity |
|---|---|
| Blastx | E3 ubiquitin-protein ligase At3g02290 from Arabidopsis with 58.2% of identity |
| Eggnog | zinc ion binding(ENOG41121N2) |
| Kegg | Link to kegg annotations (AT3G02290) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019442756.1) |
| Pfam | RING-H2 zinc finger domain (PF12678.6) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |