| Id Trinity | TRINITY_DN49928_c0_g2_i11 |
|---|---|
| Name Transcript | Ll_transcript_456087 |
| Sequence | GTCTTATTTTACCATTATTTCCAACAGTGTGAGGAAGGAGTCATGAGAATTGAGCAGCATCATTTCCATATACTTGGTCATCATCTTCACCTTCTTCTTC TTCTTAGTATATAGAAGAAAGTGTGTACACACGTCATTCCTTAACGTGCGCACCCCCTGCGTATTGAAATGGAGCCTCACACTTCATCATTTGTATCCAA AGCGAGAACCGCGCTTCATTCTGCGGCTGCGAAAGCGGAGCGTGTTCTCAATGACTTCAAATCCGATCGAGATTCTGATAAACAATCGAATGATGATTTT GGAGGGAAGCAGCGGCATGAATCTCCTCGGAATGAGAACGAGTCTAAGCTTCTCAGTGAATTGAAGCATATAAAGTGGAGACCACCGCATATAGGAATAA AGCAAGATTGGCAAGATAAATTTAACAATATTCGGAAAGGGAGAAAAGAAGTCGAAGATACAGATAAAATCCGAGACACAAACATGGCCGCTGTTCCATT TTACGATGAAAATTTGTACATCCTGAATATGAAATATGATGCTGATATCAAGGCTTCAGAAGCAATTCCCTCAGTTGAGGGCTTAATTGCCGCGACTAAA GACCCTATTCCTCCATCTTCTGTCATGAAGCAATTGGCTAAAGCTGTTGAGGCTGGAAGGAAAACAAATTCAATGAAAGATTTTGCAGCTTCAACTGAAG GTTCTTCACCTGCCAAAGATAGGGCAGGCTTAACTCTCTCTGCAATGAAGGCTTTAGTGTTGCGAGAAAAGGAGGATAACCTTACCTCTGAGTTTAGTAG CAATGAGAAAGTTGGGCTCTTGATTAATTCTCTGTTTGATCCAGTTGGCGAGTTCCTCAAAAGGAAGGTAAACTCTTATCCAGATGAAGCTTGCATGACA GCTTTGCCAAGTGATATTCATGGTGCTCCTCCGGAAAGCTTGATTGTTAAGTTAGCTGAAGTCATTGGAAACTTCAAGACGCTTAGAAAAATGGGTCTTT TCTGGTGCAGGATTGTTGTCGAACTGCGAAAATTTTGGTCTGAAGAACAATATTTACCTGGAGTTCCCCCAGATGACATTCCAGATCTGAAGTCATGTCT TCTATATCAACAATTTCAAGTAATTAATTGTTGCATCTCTCGGAAAAGGCGTCATATTATTGCAACCGAATCTCTTGATTCTCTGATGATGGAAGCCAAT TCAAATGTAGAAGAATCAGAAAACAATACCAAGAAAATTCCTGCAAACCATTTATTATATGCTAAATTAAGTACAGGGGAGCTTGTTCTTCGACTAGGTG CCGAGTGCCCATCTGGAGATATGACGTTGTTGGAAACTGGCGAGCCTGTGTACTCTCCTGTCACTCAGGAAGGACCTCTGCTTACAGAAGATCTTATCAA AGAGACTGAGGAGTTTGTGCTGCGGACAGGGAGTGTTGGCGCTGGGTGCTCTCATCTCCTGTCTGATATGCAGGCTTTCAAGGCTGCAAATCCTGGTTGC ATTTTGGAAGATTTTGTAAGATGGCACTCTCCTCCTGATTGGACAGAAAGTGAGGCAGGTACTGTGGACAGTGATTTTTTTGATAGTAGTGAGTCGTTGT CCACCAGAGGTCAGCTAAGTCTGCGAATGCAAAAAGAAGGCAATTTGTGGCGCGAATTGTGGGAAACTTCTAAACCAGTACCAGCTGTTAAACAGGCACC TCTGTTTGATGAGGATTTGGCAGTGGAGGGCATCCTCAATGCATTTGAGGACATTCGGCCTTCTGAGCTTTTTGAACAGCTGTTTATTTCTTTACTTGGT GTAGGATTAGCAATTGCTGAACCTATGCTGTCTGGTGAAAGTGACTTCTCAAAGTTGTTCAATGACTGCAAGGATTACGTAGTTACGACTTGTCAAAGCA ACAAATTTAGTGAGAAAGTTGATGAGCTTGTTCAGGTATATGAAACAGTGGAGAAAATGTTACTGAAGCCTGAGGAAGTAATAAAGATGATGAAGAAAGC AGAAGAATCAAGTATGACTCCTGGTGAACCAAAGCGTCGGTTTAAGAGACTCCTCCTTATTTTTGGGGGTAAAGATAAAATGCTGACGAGTCCGGTCTCG AAGGATCAGACTAACGACGAAGAAAACCCGTTTCGACAATCCTTTTCCAGTTTCTTTGACAGCAAGTCATCTTTATTTTCGAAGAAGCCTCCTAAGCATG GAAGCCTTTCCCCTGCTGAGAATCCTCATTGTTTGGAAAGTGATTGGAAACTTGTCTAGACAGAGTTCAGCCTCACCCTATTTATGATAAGCAAACATGT TTTTTTGTTTTTTTGTCCCTAGCCAGATCACCGTAAATTATTTTTGTTTATTCCTTTTTAGTGATCAACAAATTTTAATGCATTCTTAAATTACCTAAAC TATTACTATTTTTTTATATTTTTTTGTATAGCATTGCTTCTTGGTGAGGGATTGTACAAGGATGATTAGTCAAATGGTATAAAACTTCCCCGTTTCCTGC AAATGTCACGTTGCTTTTGAATATTTTCAAAGAATGCTGTTTTCCCCACTCACCCGTGTAATTCATTTTTAAGCTCAATGTACACCATGAAATTGTAACA ATTTGCTTTAGTCTTATAAAAAAGGGTTGGGC BLAST |
| Tissue | pods |
| Gene name | LI_gene_173358; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_456087
| Blastp | Rab3 GTPase-activating protein catalytic subunit from Danio with 31.84% of identity |
|---|---|
| Blastx | Rab3 GTPase-activating protein catalytic subunit from Sophophora with 30.77% of identity |
| Eggnog | RAB3 GTPase activating protein subunit 1 (Catalytic)(ENOG410Y2R4) |
| Kegg | Link to kegg annotations (777744) |
| CantataDB | Link to cantataDB annotations (CNT0002243) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019440686.1) |
| Pfam | Rab3 GTPase-activating protein catalytic subunit (PF13890.5) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |