Ll_transcript_456994

• Id Trinity: TRINITY_DN49942_c3_g1_i3
• Name Transcript: Ll_transcript_456994
• Sequence: TCACCTTCCCCTTTTTTTTTATTTCATCTCTCAATTTCGTTTTATTTGTTTTTCGTAGACGTCAAAAAAAGAATTTCTGACGCTGTAGAGGATAACCAGG TCAATTTCTTTCTATTTTCTTTTATTCCGGATAAAAGGTGAAAATTGTGTTAGACAGTATCCGGCTGATATAAAATTTTGTCGAATTTCTATGATATGAA ACCAACATTTTAACGCCTGCACAGTTAGACACTGCTCCCTGGGTGCCACGTCTCGACGTCTTATATATTTTAGAGTAGTAATTTAAATTGCAGTTACAGT CGCAAAATTATGGTTACTGTGATTTCTGTCATTGTAGCTGTTACGGTGTGAATTTTTTTGATTAAAAATATATGTTAAATTCGACGTGGCCTGGTACGGC CCAAATGCGGTTGCTCTACTGCCTGATGCAGCTACATGATTTGTTGTTACACCGCAATCGCAATGTTGTAGCCATATCATGTTATGCAGTCCGCAATTTG AAACAATGTTTTAGATATTTCTCGTGCTTGCGTGTGCCCATGTTCGTGCCTCATAGACTATGTTCCTCGTTTGTGCCTCCCGAGCTAATTTTCTAATTTG AATACAAGTGATGATGCCTCATAAACAATGTTTGATCCTTTCTAATTTGAATACAAGTGATGACATGTTTGAGTGCTGGATATATATATATATGGCATAA AAGCTAAAGTTGGTTTAACAATATACATTTTCCCCTTTGAATTTATGTCATAAAAGTGAATATGTAATGCATATTTTTTGGTCATTTTCCGGAATTCGTA ATTTATGTGCAGGAAGCAGTTGCTGTGACCACTGCAATACAGGAAGAGATACTTATGGAGATGGGTGTTGGTATGTTTATCTTAGTGTCATATATTAGTT GTTTTTTGTATTATGTGATACATTTTATGATATATTTTTGGAGATGATTGTTGTCATGTTGGTATGTTGATTTTTTTAGTATCATTAATAGAGTAGGTCA TGATATTATTTATGTGAATTAAGCTCTACAGAAGACTACCTCAAAACCACCATTGCCGGCGTGCCGCAATCATTGGATATGTGTATTAGTTTCCAATGTG ACAGCCATTACCACCCCATGTCTTATAGGATATTCACTTGTTAAAGTGTTATATACTTTAAGGCAAAAATGTGAGAGCAGGAAAACCCGAGTAAAAAGTG TGGGCTAGTAACGAGACTCCTACCTAGTAGGGTCTGGAGAGGGTTGATTGTAAAGAAAAGAAATCTAAGAGAAGAAGATGATAGAAAACTGAATTTTTAT GTATTTGTATTTCTATATTTTCTGATTACAAAGAGAGAAGAAGCATAACTCCAATTTATAGGAAATTATCTAACTAAACAGTTACTATGACAGTTACAGA ATAATGTAACTGCCACTAACTACTGAAGTTGTGGGTGAGTTGAAAAATCTATCAACCACTTGAAGCAACTTCCTTAGAATCAGAAATCTAGAATTAGAGA GAGGCTTGGTCAGAGCATCTGCTGTCTGAACTTCAGATGGAACATGCTTGACATGTAGCAGCTTGGATTGGACTCTATCTCTTACAAAGAATAGATCCAA TTCAATATGTTTTGTTCTGTGATGCAAAACAGGATTGTGTGCCATGACTACAGTGCTGAGATTATCACAGAAAACCATAGGAGTTTGATGAGCAAATTTT AACTCAGAGAGAAGAGATTCAATCCAAATAAGTTCTTGAGAAGCTAGGGCTAGGCTTCTATACTCAGCCTCAGTGCTTGATCTGGAAACAGTTTGCTGCT TTTTAGACCACCAAGTGACAATATTTGGACCCACAAACAGGCATGCTCCTGAGATGGACTTTCTATCATCAGGATCAGAAGCCCAATCAGCATCACAGAA TGCTGTGATAAGTAGAGGAGTGTTAGGTTTAGCTGGTCTGAGTTGGAGGCCAAGAGTGATAGATCCTTGTAAGTACCTTAATATTGTTTTAACAGCAGTC CGGTGGTGCTCCAAGGGATTAGACATATACTGACAGACTTTGTTAACATTGAATGCCAAATCTGGTCTTGTAATTGTGGTATACTGAAGTGCTCCTACAA TAGCCCTGTAAAGAGTAGGATTATCAAATGATGCAGACCCAATTTTTGTCAGCTTACAAGAGGATGACATTGGAGTAGGTAGAGGCTTTGCAGAGTCCAT GTTTGCCTTTTTGAGAAGATCTTTTATGTACTTTGTTTGAGAGAGAAATAGAGATCCATTAGGCAAAGATTTTACCTCAATACCAAGAAAATAGTCTAAG CTTCCCAACCTCTTTAATGCAAAGGCATTACTCAATTTGTCAATAAGCTGATTTATCTGAGAAGTAGATGATCCTGTGACAATGATATCATCTACATAAA CAAGCACATAGAGTCTGTGTGTAGATGAAGTGTGAATGAATAAAGAATTATCACACCTACTGTTGAGAAAACCAAACTGAAGCAGAGTTCCTTTCAGTTT TTCAAACCACTGCCTTGGAGCCTGTTTTAGGCCATAAAGAGCCTTGTGCAGTCTGCATACTTGACCCTTATTTCCAGAATGAAATCCAGCAGGTTGAACC ATATAGACCTCTTCATTTAGAATACCATTCAGAAATGCATTATTAATGTCTAACTGTTCTAGAGGCCATTGATAGGTTACAGCTAAGGTGAGGAGAATTC TGATAGTGATAGGTTTAACAACAAGAGAGAATGTTTCTGTGTAGTCAACACCCTGTTTTTGATGAAAACCCTTTGCCACAAGCCTTGCTTTATACCTATG TACTGTCCCATCAGGATTTTCTTTGATCCTAAACACCCATTTACAACCAATAGCTTGTTTGTTTGGAGGCAAATCAACAATAGACCAAGTGCCCAACTTA AAGAGTGCATTGTATTCTTCTTGCATAGCCTGAACCCAAAGAGGATCACTGAGAGCAGTTTTCACAGATGTTGGTTCACTTTGAACAAGCATAGCCCTAG GTACTCTAGGAACAAAGGACTTATCAATACCAGACTTGGATCTAGTTTGCATAGGGTGAGTGGACTGAGGAATTAGAGGAACAGTGACAGAGTTAGTGTT TGTGGATGACTCACTGTTGGGAGTTAGGGACTCAATATGTAATGATGAAACAGGTTGACTTGTTTCAGACATGAGAGGAGATGAGACAGGGACAGATTGT AATGAGGGAGAATTCATAGAAGACTGACTAGGTGTGACTGCTGGAACAGAGACCAGATTAGGAGATTGGGAAATGGGAGTATTTGTAGGGTCAGAATTTG TGGTGGTTGTAGTAACAATATGGGGATAAAAGTGTGTTGTATGAGGAGGATGAGTTGTAGGTGGAGATATGGGTGTTGAGTTTAAGGTAACAGACTCTTT TGATGCATAGGGAAAGACATACTCATTAAACACAACATCATTGGAAATGTAGAGTCTACCATCATGAGAAAGACATTTGTATCCTTTATGATGAGTAGAA TAACCTAGAAAAATACATTCAGTAGACCTAGACTCCATTTTGTGTTTGTTGTAGGGTCTTAACAAAGGAAAGCATGCACACCCAAATACTTTAAGGAATG AGTAATCAGGTTGCACACCAAACAAGAGAGAATGAGGTGAAGACTTTTGTAGTATTAGAGAGGGCAATCTGTTTATTAAAAACACTGCAGTAGTAAAGGC ATACTCCCAATATGACATAGGTAAAGAGGCATGAGTAAGCAAGGCTAAACCAGTTTCCACTATGTTTCCTTTCAACAGTGCCTTGTTGATAATGACTATA AGGACATGAAACTCTATGAACAATGCCTAGGGAGACTAGGTATTCAGTAAATGGTCTAAACTCACCCCCCCAATCACTTTGTATGGCTTTGATTTCTGTT TGGAATTGTGTATGAACATACTTATGAAAGTGTTTGAAAACAAGTAAGGTGTCTGACTTTTTCTTTAGCAAATAGATCCAAGTATGTTTGGTATGAGCAT CAACAATTGATATGTTTGGTAGTCAACTATGTATTTTTCTTGTTCTTGGTTCTTGAGATGAAAGTCAGTTTATATTTGATAGGTGATACTTTTATGTCAA CATGCTGGACAAGCCAATTCAGATACAGTTTTAGGATATAGTTTTTGTCCAAAACATTTTTCGGACCAGGAAGTATGGTCGGGAGGGAATTAGGAAATAG ATGCTATATTCTGTCATTTCATTTATAGATCTTTGATTTCCTCATGCAAAATTCCTGGCTCTCTTCACCTAAATAAAGCTTCCAAATTCTGCAGTGGTCA CATTTGATAGGATGCCATTCAGCCTATTTAATTTTTTGTTAAATCTTTTATTTTATTGTAATGTACTTTTTGCTTTTTCCTTCACTTTAGTTTAGGATAG CTGTGAAGGAAACTCAGGCATTTTGATACATTGATTCATTATAAACCTGCTTTATCATCTAACCTACATAGATTGTAGATTTGTAGTTTGTCCGAAAATT TAGTTACTGAAAAGAGTGCACTCACCCTTGTTACTAAATCAAATTTGTTGTTAAGATTTTATCAATTTGTTCAGATCTTCTGTTTGATTTGACTGTTATT GAAATTGTTTTGCCATTATTGTCGTTGTTATACTACTACAACAGATCCAAGATTTGGTATTTCATGCCTGGGAAAAGTTAGTACTGCATATGAGAATGAC CGAGATCTGGTGATTCAGTTTTATAAATTCCTTGCAAAAGAGGAGACGGCCTGCGATGAAG
• Tissue: pods
• Gene name: LI_gene_173433;
• Additional information: details;

Expression of Ll_transcript_456994

FPKM

• PAB: 0
• PNAB: 0.8
• PS1: 1
• PS2: 0.9
• PS3: 1.2
• PW1: 0.6
• PW2: 1.1
• PW3: 1.1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_456994

• Blastp: Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 33.77% of identity
• Blastx: Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 37.5% of identity
• Eggnog: -
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019414575.1)
• Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) (PF07727.13)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;