Ll_transcript_458532

Id TrinityTRINITY_DN49948_c0_g1_i1
Name TranscriptLl_transcript_458532
SequenceGAGAGACTGAGAGCGAAAGAGAGAGAGAAATTGATTCGCTATTTTCTGTCAATGTGAGAGAGAGCGTGAGAGGGAGACGCAGAGCGAGAGAGCGAGAGCG AGAGCAAAGTGAAATATGAAGTGAGTTTTGAGAATCTAATATCTAATATCTAATAATACGAAGAAGAAGAAGAAGAAGAAGATGAGTACCGTTGATAAGA TGTTGATCAAAGGGATTCGTAGTTTCGACCCCGAGAACAAAAATGTGATCACTTTCTTGAAACCCTTAACCCTTATTGTGGGTCCCAATGGTGCCGGCAA GACCACCATCATCGAGTGCCTGAAGCTCTCCTGCACCGGGGAGCTTCCTCCCAACGCCAGGTCCGGCCACAGCTTCATCCACGACCCTAAGGTTGCCGGC GAAACCGAAACAAAGGGACAGATCAAACTCCGGTTCAAGACAGGCGCAGGGAAAGATGTTGTCTGTATAAGATCATTCCAACTCACTCAAAAGGCTTCTA AGATGGAATTCAAAGCCATTGAGAGTGTCCTTCAAACCATTAACCCACATTCTGGTGAAAAGGTTTGTCTTAGTTATAGATGTGCTGATATGGATAGAGA GATCCCTGCTCTCATGGGTGTCTCTAAGCCTATTTTGGATAATGTTATTTTTGTTCATCAAGATGAAGCCAATTGGCCACTCCAAGATTCTTCTACCTTG AAGAAGAAGTTCGATGATATCTTTTCAGCAACTCGATACACAAAGGCATTGGAAGTTATAAAGAAACTTCACAAGGATCAGGCTCAAGAGATTAAGACTT ACAAGCTCAAACTGGAAAACCTTCTAACTCTCAAAGATGCTGCTTATAAGCTTCGCGAAAGCATTACACAGGATCAGGATCAAACAGAATCTCTTAAACA TCAGATACAACACTTGGAGGAAAGCGTTCAAGATATTGATAATAAGATTCATCATGCTGAGAAAACATTGAAGGATTTGCGGAAGCTGAAGGACCATATA TCAACAAAAACTACTCAAAGAAGCACTCTGTTTGAGGAAAACCAGAAACAATATGCCGCCCTTGCTGAAGAGAATGAAGATACTGATGAAGAGTTGATGG AATGGAAGACCAAGTTTGGTGAAAGGGTTGCAATTTTAAATACAAAAATAAGCAAGTTGGAGAGAGAGGTGAAGGACACTGACACTAGAAGTGAATTCCT TAATGAGACCATCAAGGATTCTATCAAGGAGATTAGCAAGCTACAAACTGAAGCTGAAGCTCACATGTCTTTGAAGAATGAGCGTGATTCCTCTATTCAA AATCTTTTTGCTAGGTATACTTTAGGGTCTCTTCCAGAGTCATCCTTCAGTGATGAGGTTGCTTTAAACCTCACTAATCATGTAATCTCAAGGTTGAAGG CTCTTGAGAAGGACCTGCAAGATAAAAAGAAAACAAATGACAATAAACTCAAGATGGCATGGGATTGTTATGTCAGCGCAAATGACTGTTGGAAAAGTAC CGAGGCCAAAAAGCAAGCTAAAATAGACGAGAAGGCTCGCAATTTAAAGCGCATTGAAGATAAGAAAAATGAGCGGAGGATATTTGAACCTCAAATTTCA GACACAAATTTTTCTCGCATAGATGAAAGAGAAAGAAGTTTGCAAATTGAGGTCGAGAGGAAGACAAGCCAACTTGCTGAAAGAGAATTTGAAGCAAATA TACGTCAAAAGCAAACTGAGCTATTTAGTATAGACCAAAAGATTAAGGATGTCAGCCGGGAGAAGGATATCATGGCTTCTGATTCAGAGGACAGAGTGAA GCTATCTCTTAAGAAGGCAGAATTAGAGAATCAGAAGAAGAAGCATAGAAAGATAATTGATGAACACAAGGATAAAATAAGAAGGGTGCTAAAAGGGAGA GTTCCTCCTGATAAGGATGTGAAGAAGGAAATTACGAAAGCATTAAGGACTGTTGAAGCTGAATTTGATGACTTGAATGCGAAGTACCGTGAATCTGAGA AGGAAGTTAATATGCTGCAGATGAAAATACAAGAAGTTAATGCTAATATATCCAAACACCACAAGGATTTGGAATCAAGGAAGAGATTTATTGAATCAAA GCTTCAGTCGTTGGATCAGCAACGTTCTGGAATTGATGCTTATCTCACAGTTTTAGAGTCTTCCAAGGAGAAAAGAGATGTCCAGACAAGCAAATATAAC ATTGCTGATGGTATGAGACAAATGTTTGATCCGTTTGAAAAGGTTGCCAGAGCTCATCATTTTTGCCCTATCTGTGAGCGCCCTTTCTCTGCTGACGAAG AAGATGATTTTGTCAAAAAGCAAAGAGTGAAGGCTGCTAGTACAGCTGAACGTATGAAACTTCTTGCCATGGAATCCTCAAACGCAGACTCTCATTACCA GCAGTTGGACAAGCTTCGTATTGTTTATGAAGAACATATTAAACTTAGCAAGGAGACAATCCCTAACTCTGAAAAGGAACTTCACCAACTTAAAGAAGAA CTGGATGACAAATCTCAGGCACTTGATGATGTTTTAGGTGTTTTAGCTCAGATAAAGACTGACAAGGATGTGGTTGAGGCATTGGTGCAACCTATTGAAA CTGCTGACCGGCTTTTCCAAGAAATTCAAGCTGTGCAAAAGCAAGTTGAGGATTTGGAATACAAGCTTGATTTTCAAGGCCAAGGAGCAAGATCTCTGGA AGAAGTTCAGTTGGAGCTTAACACATTGCAGGGCACAAAGGACACTTTGCATACCGAATTGGAGAAGTTGAGGGAAGAACAGAGGTATATGGAGAATGAC CTACATAGTATTAATTCACGGTGGCGTGCTCAAAGGGAGGAGAAAATGAAAGCAGCAAACTTGTTGCAAGAAGTTAAAAGAGTAGAAGAAGAATTAGAAA GTCTGACTCAAGAGAAAACCCAACTTGATCTCGATGAGAAGGTTGTCTACTTATCTGAGACACAGATGGGTACTTAGTTCCAAGTTATCTTTTTACCCCT TTCCATGCATTTGAGTACCCCACACACTAAAGAAAATTCAGTAAGATGATTTATTCTCTCAGGCAAAGAACAATCAGCTGTTTTTTTTTATAAACTAAGG TATATTGTTAAAAACCAGTA BLAST
Tissuepods
Gene nameLI_gene_173467; 
Additional informationdetails; 

Expression of Ll_transcript_458532

Labels

PAB abscising pods
PNAB non-abscising pods
PS1 seeds stages 1-3
PS2 seeds stages 4-6
PS3 seeds stages 7-8
PW1 pods wall stages 1-3
PW2 pods wall stages 4-6
PW3 pods wall stages 7-8

Annotations of Ll_transcript_458532
BlastpDNA repair protein RAD50 from Arabidopsis with 69.58% of identity
BlastxDNA repair protein RAD50 from Arabidopsis with 69.58% of identity
EggnogInvolved in DNA double-strand break repair (DSBR). The Rad50 Mre11 complex possesses single-strand endonuclease activity and ATP-dependent double-strand-specific 3'-5' exonuclease activity. Rad50 provides an ATP-dependent control of Mre11 by unwinding and or repositioning DNA ends into the Mre11 active site (By similarity)(COG0419)
KeggLink to kegg annotations (AT2G31970)
CantataDB-
Mirbase-
Ncbi proteinLink to NCBI protein (XP_019414681.1)
PfamAAA domain (PF13476.5)
Rfam-
GOLinks to GO: General; Genes and gene products; Annotations; Ontology;