Ll_transcript_458533

Id TrinityTRINITY_DN49948_c0_g1_i2
Name TranscriptLl_transcript_458533
SequenceGTAAGAGGGTATATGATTTTTTTTTTTTTTTTAAAAGTTATATTAGTGTGTTGAGGAATAAAGGATATGAAAGTGAAAAATGAAATAAAAAATAGGAAGG AAATAGTATTTTGGCCTTTTGGGGTTTTGCAGAGTTGGCGGAAAGGAAGGGAGCGAGAGAGCGAGAGAGCGAGAGCGAGAGCAAAGTGAAATATGAAGTG AGTTTTGAGAATCTAATATCTAATATCTAATAATACGAAGAAGAAGAAGAAGAAGAAGATGAGTACCGTTGATAAGATGTTGATCAAAGGGATTCGTAGT TTCGACCCCGAGAACAAAAATGTGATCACTTTCTTGAAACCCTTAACCCTTATTGTGGGTCCCAATGGTGCCGGCAAGACCACCATCATCGAGTGCCTGA AGCTCTCCTGCACCGGGGAGCTTCCTCCCAACGCCAGGTCCGGCCACAGCTTCATCCACGACCCTAAGGTTGCCGGCGAAACCGAAACAAAGGGACAGAT CAAACTCCGGTTCAAGACAGGCGCAGGGAAAGATGTTGTCTGTATAAGATCATTCCAACTCACTCAAAAGGCTTCTAAGATGGAATTCAAAGCCATTGAG AGTGTCCTTCAAACCATTAACCCACATTCTGGTGAAAAGGTTTGTCTTAGTTATAGATGTGCTGATATGGATAGAGAGATCCCTGCTCTCATGGGTGTCT CTAAGCCTATTTTGGATAATGTTATTTTTGTTCATCAAGATGAAGCCAATTGGCCACTCCAAGATTCTTCTACCTTGAAGAAGAAGTTCGATGATATCTT TTCAGCAACTCGATACACAAAGGCATTGGAAGTTATAAAGAAACTTCACAAGGATCAGGCTCAAGAGATTAAGACTTACAAGCTCAAACTGGAAAACCTT CTAACTCTCAAAGATGCTGCTTATAAGCTTCGCGAAAGCATTACACAGGATCAGGATCAAACAGAATCTCTTAAACATCAGATACAACACTTGGAGGAAA GCGTTCAAGATATTGATAATAAGATTCATCATGCTGAGAAAACATTGAAGGATTTGCGGAAGCTGAAGGACCATATATCAACAAAAACTACTCAAAGAAG CACTCTGTTTGAGGAAAACCAGAAACAATATGCCGCCCTTGCTGAAGAGAATGAAGATACTGATGAAGAGTTGATGGAATGGAAGACCAAGTTTGGTGAA AGGGTTGCAATTTTAAATACAAAAATAAGCAAGTTGGAGAGAGAGGTGAAGGACACTGACACTAGAAGTGAATTCCTTAATGAGACCATCAAGGATTCTA TCAAGGAGATTAGCAAGCTACAAACTGAAGCTGAAGCTCACATGTCTTTGAAGAATGAGCGTGATTCCTCTATTCAAAATCTTTTTGCTAGGTATACTTT AGGGTCTCTTCCAGAGTCATCCTTCAGTGATGAGGTTGCTTTAAACCTCACTAATCATGTAATCTCAAGGTTGAAGGCTCTTGAGAAGGACCTGCAAGAT AAAAAGAAAACAAATGACAATAAACTCAAGATGGCATGGGATTGTTATGTCAGCGCAAATGACTGTTGGAAAAGTACCGAGGCCAAAAAGCAAGCTAAAA TAGACGAGAAGGCTCGCAATTTAAAGCGCATTGAAGATAAGAAAAATGAGCGGAGGATATTTGAACCTCAAATTTCAGACACAAATTTTTCTCGCATAGA TGAAAGAGAAAGAAGTTTGCAAATTGAGGTCGAGAGGAAGACAAGCCAACTTGCTGAAAGAGAATTTGAAGCAAATATACGTCAAAAGCAAACTGAGCTA TTTAGTATAGACCAAAAGATTAAGGATGTCAGCCGGGAGAAGGATATCATGGCTTCTGATTCAGAGGACAGAGTGAAGCTATCTCTTAAGAAGGCAGAAT TAGAGAATCAGAAGAAGAAGCATAGAAAGATAATTGATGAACACAAGGATAAAATAAGAAGGGTGCTAAAAGGGAGAGTTCCTCCTGATAAGGATGTGAA GAAGGAAATTACGAAAGCATTAAGGACTGTTGAAGCTGAATTTGATGACTTGAATGCGAAGTACCGTGAATCTGAGAAGGAAGTTAATATGCTGCAGATG AAAATACAAGAAGTTAATGCTAATATATCCAAACACCACAAGGATTTGGAATCAAGGAAGAGATTTATTGAATCAAAGCTTCAGTCGTTGGATCAGCAAC GTTCTGGAATTGATGCTTATCTCACAGTTTTAGAGTCTTCCAAGGAGAAAAGAGATGTCCAGACAAGCAAATATAACATTGCTGATGGTATGAGACAAAT GTTTGATCCGTTTGAAAAGGTTGCCAGAGCTCATCATTTTTGCCCTATCTGTGAGCGCCCTTTCTCTGCTGACGAAGAAGATGATTTTGTCAAAAAGCAA AGAGTGAAGGCTGCTAGTACAGCTGAACGTATGAAACTTCTTGCCATGGAATCCTCAAACGCAGACTCTCATTACCAGCAGTTGGACAAGCTTCGTATTG TTTATGAAGAACATATTAAACTTAGCAAGGAGACAATCCCTAACTCTGAAAAGGAACTTCACCAACTTAAAGAAGAACTGGATGACAAATCTCAGGCACT TGATGATGTTTTAGGTGTTTTAGCTCAGATAAAGACTGACAAGGATGTGGTTGAGGCATTGGTGCAACCTATTGAAACTGCTGACCGGCTTTTCCAAGAA ATTCAAGCTGTGCAAAAGCAAGTTGAGGATTTGGAATACAAGCTTGATTTTCAAGGCCAAGGAGCAAGATCTCTGGAAGAAGTTCAGTTGGAGCTTAACA CATTGCAGGGCACAAAGGACACTTTGCATACCGAATTGGAGAAGTTGAGGGAAGAACAGAGGTATATGGAGAATGACCTACATAGTATTAATTCACGGTG GCGTGCTCAAAGGGAGGAGAAAATGAAAGCAGCAAACTTGTTGCAAGAAGTTAAAAGAGTAGAAGAAGAATTAGAAAGTCTGACTCAAGAGAAAACCCAA CTTGATCTCGATGAGAAGGTTGTCTACTTATCTGAGACACAGATGGGTACTTAGTTCCAAGTTATCTTTTTACCCCTTTCCATGCATTTGAGTACCCCAC ACACTAAAGAAAATTCAGTAAGATGATTTATTCTCTCAGGCAAAGAACAATCAGCTGTTTTTTTTTATAAACTAAGGTATATTGTTAAAAACCAGTA BLAST
Tissuepods
Gene nameLI_gene_173467; 
Additional informationdetails; 

Expression of Ll_transcript_458533

Labels

PAB abscising pods
PNAB non-abscising pods
PS1 seeds stages 1-3
PS2 seeds stages 4-6
PS3 seeds stages 7-8
PW1 pods wall stages 1-3
PW2 pods wall stages 4-6
PW3 pods wall stages 7-8

Annotations of Ll_transcript_458533
BlastpDNA repair protein RAD50 from Arabidopsis with 69.58% of identity
BlastxDNA repair protein RAD50 from Arabidopsis with 69.58% of identity
EggnogInvolved in DNA double-strand break repair (DSBR). The Rad50 Mre11 complex possesses single-strand endonuclease activity and ATP-dependent double-strand-specific 3'-5' exonuclease activity. Rad50 provides an ATP-dependent control of Mre11 by unwinding and or repositioning DNA ends into the Mre11 active site (By similarity)(COG0419)
KeggLink to kegg annotations (AT2G31970)
CantataDB-
Mirbase-
Ncbi proteinLink to NCBI protein (XP_019414681.1)
PfamAAA domain (PF13476.5)
Rfam-
GOLinks to GO: General; Genes and gene products; Annotations; Ontology;