Ll_transcript_458534

• Id Trinity: TRINITY_DN49948_c0_g1_i3
• Name Transcript: Ll_transcript_458534
• Sequence: GTAAGAGGGTATATGATTTTTTTTTTTTTTTTAAAAGTTATATTAGTGTGTTGAGGAATAAAGGATATGAAAGTGAAAAATGAAATAAAAAATAGGAAGG AAATAGTATTTTGGCCTTTTGGGGTTTTGCAGAGTTGGCGGAAAGGAAGGGAGCGAGAGAGCGAGAGAGCGAGAGCGAGAGCAAAGTGAAATATGAAGTG AGTTTTGAGAATCTAATATCTAATATCTAATAATACGAAGAAGAAGAAGAAGAAGAAGATGAGTACCGTTGATAAGATGTTGATCAAAGGGATTCGTAGT TTCGACCCCGAGAACAAAAATGTGATCACTTTCTTGAAACCCTTAACCCTTATTGTGGGTCCCAATGGTGCCGGCAAGACCACCATCATCGAGTGCCTGA AGCTCTCCTGCACCGGGGAGCTTCCTCCCAACGCCAGGTCCGGCCACAGCTTCATCCACGACCCTAAGGTTGCCGGCGAAACCGAAACAAAGGGACAGAT CAAACTCCGGTTCAAGACAGGCGCAGGGAAAGATGTTGTCTGTATAAGATCATTCCAACTCACTCAAAAGGCTTCTAAGATGGAATTCAAAGCCATTGAG AGTGTCCTTCAAACCATTAACCCACATTCTGGTGAAAAGGTTTGTCTTAGTTATAGATGTGCTGATATGGATAGAGAGATCCCTGCTCTCATGGGTGTCT CTAAGCCTATTTTGGATAATGTTATTTTTGTTCATCAAGATGAAGCCAATTGGCCACTCCAAGATTCTTCTACCTTGAAGAAGAAGTTCGATGATATCTT TTCAGCAACTCGATACACAAAGGCATTGGAAGTTATAAAGAAACTTCACAAGGATCAGGCTCAAGAGATTAAGACTTACAAGCTCAAACTGGAAAACCTT CTAACTCTCAAAGATGCTGCTTATAAGCTTCGCGAAAGCATTACACAGGATCAGGATCAAACAGAATCTCTTAAACATCAGATACAACACTTGGAGGAAA GCGTTCAAGATATTGATAATAAGATTCATCATGCTGAGAAAACATTGAAGGATTTGCGGAAGCTGAAGGACCATATATCAACAAAAACTACTCAAAGAAG CACTCTGTTTGAGGAAAACCAGAAACAATATGCCGCCCTTGCTGAAGAGAATGAAGATACTGATGAAGAGTTGATGGAATGGAAGACCAAGTTTGGTGAA AGGGTTGCAATTTTAAATACAAAAATAAGCAAGTTGGAGAGAGAGGTGAAGGACACTGACACTAGAAGTGAATTCCTTAATGAGACCATCAAGGATTCTA TCAAGGAGATTAGCAAGCTACAAACTGAAGCTGAAGCTCACATGTCTTTGAAGAATGAGCGTGATTCCTCTATTCAAAATCTTTTTGCTAGGTATACTTT AGGGTCTCTTCCAGAGTCATCCTTCAGTGATGAGGTTGCTTTAAACCTCACTAATCATGTAATCTCAAGGTTGAAGGCTCTTGAGAAGGACCTGCAAGAT AAAAAGAAAACAAATGACAATAAACTCAAGATGGCATGGGATTGTTATGTCAGCGCAAATGACTGTTGGAAAAGTACCGAGGCCAAAAAGCAAGCTAAAA TAGACGAGAAGGCTCGCAATTTAAAGCGCATTGAAGATAAGAAAAATGAGCGGAGGATATTTGAACCTCAAATTTCAGACACAAATTTTTCTCGCATAGA TGAAAGAGAAAGAAGTTTGCAAATTGAGGTCGAGAGGAAGACAAGCCAACTTGCTGAAAGAGAATTTGAAGCAAATATACGTCAAAAGCAAACTGAGCTA TTTAGTATAGACCAAAAGATTAAGGATGTCAGCCGGGAGAAGGATATCATGGCTTCTGATTCAGAGGACAGAGTGAAGCTATCTCTTAAGAAGGCAGAAT TAGAGAATCAGAAGAAGAAGCATAGAAAGATAATTGATGAACACAAGGATAAAATAAGAAGGGTGCTAAAAGGGAGAGTTCCTCCTGATAAGGATGTGAA GAAGGAAATTACGAAAGCATTAAGGACTGTTGAAGCTGAATTTGATGACTTGAATGCGAAGTACCGTGAATCTGAGAAGGAAGTTAATATGCTGCAGATG AAAATACAAGAAGTTAATGCTAATATATCCAAACACCACAAGGATTTGGAATCAAGGAAGAGATTTATTGAATCAAAGCTTCAGTCGTTGGATCAGCAAC GTTCTGGAATTGATGCTTATCTCACAGTTTTAGAGTCTTCCAAGGAGAAAAGAGATGTCCAGACAAGCAAATATAACATTGCTGATGGTATGAGACAAAT GTTTGATCCGTTTGAAAAGGTTGCCAGAGCTCATCATTTTTGCCCTATCTGTGAGCGCCCTTTCTCTGCTGACGAAGAAGATGATTTTGTCAAAAAGCAA AGAGTGAAGGCTGCTAGTACAGCTGAACGTATGAAACTTCTTGCCATGGAATCCTCAAACGCAGACTCTCATTACCAGCAGTTGGACAAGCTTCGTATTG TTTATGAAGAACATATTAAACTTAGCAAGGAGACAATCCCTAACTCTGAAAAGGAACTTCACCAACTTAAAGAAGAACTGGATGACAAATCTCAGGCACT TGATGATGTTTTAGGTGTTTTAGCTCAGATAAAGACTGACAAGGATGTGGTTGAGGCATTGGTGCAACCTATTGAAACTGCTGACCGGCTTTTCCAAGAA ATTCAAGCTGTGCAAAAGCAAGTTGAGGATTTGGAATACAAGCTTGATTTTCAAGGCCAAGGAGCAAGATCTCTGGAAGAAGTTCAGTTGGAGCTTAACA CATTGCAGGGCACAAAGGACACTTTGCATACCGAATTGGAGAAGTTGAGGGAAGAACAGAGGTATATGGAGAATGACCTACATAGTATTAATTCACGGTG GCGTGCTCAAAGGGAGGAGAAAATGAAAGCAGCAAACTTGTTGCAAGAAGTTAAAAGAGTAGAAGAAGAATTAGAAAGTCTGACTCAAGAGAAAACCCAA CTTGATCTCGATGAGAAGCATTTGTCAGAAGCTCTTGGACCTTTATCAAGGAAGAAAGATAAATTATATGCTGATTATGATGAACTGAAAAATAGACTTA ACCACGAGTATGAGGACTTGGCTGAACAAAAGAGAAATTATCAGCTAGAAGTTGAGTCACTATTGAAGACGACCTCTAAGATTAAAGAGTACTCTGATTT AAAGAAAGGAGACCGGTTGAAGGAAATGCTAGAAAAGAAATATCAATCAGAATCTCAACTAAAAAGTTGTGATACCAAGAAGCAGGAAATTTTAGTTGAA CTAAATAAAAGTAAGGATTTGATGCGAAATCAAGATGTACTGAAAAGAAATATTGAGGACAACATAAATTACAGGAAAACAAAAGCTGAAGTAGATAAGC TAGCAGATGAAATTGAAACACTGGAAGCAAATATGCTGAAGGTTGGTGAGGTTTCCACAGTTGAAACTGAACTCCGGAAACTATCGCAGGAAAGGGAGAG GCTTCTTTCAGAGATGAACAGGTGCCGTGGAACAATGTCTGTCCACCAAAGCAATATTTCGAAAAATAAGATTGATCTTAAGCAGACACAGTACAAGGAC ATAGATAAGCGATACTTTGACCAGCTTATCCAGCTTAAGACAACAGAAATGGCAAACAAGGATCTGGACAGATACTACAATGCGCTTGACAAAGCACTGA TGCGGTTTCACACTATGAAAATGGAAGAAATCAACAAAATTATAAGGGAATTGTGGCAACAAACGTATAGAGGACAGGATATAGATTACATTAGCATTCA TTCTGATTCTGAAGGTGCTGGGACCCGTTCCTACAGTTATAAGGTTCTCATGCAGACCGGTGATGCTGAGTTAGAAATGAGAGGAAGATGCAGTGCGGGA CAGAAGGTCCTTGCATCTCTTATCATAAGGTTGGCTTTAGCTGAAACATTTTGCCTCAATTGTGGAATACTGGCATTGGATGAGCCAACCACCAATTTGG ATGGGCCAAATGCTGAAAGTTTGGCTGCTGCTCTCCTAAGGATCATGGAGGACAGGAAAGGCCAAGAAAATTTTCAGCTAATTGTAATTACTCATGATGA GCATTTTGCACATATGATTGGTCAACGCCAGCATGCCGAGAGATATTATCGAGTCGCCAAAGATGACCATCAGCATAGTATAATCGAATCTCAGGAGATA TTTGAGTGAAGGAGGTCTGAGTTGGAGAATCTTGATACAGCAGAGAGCCCAAAGTCATACCTCAAATCATCACATATGGTATTTTGATGTGTGGTCCCAG TTAACTAAATGATTTGAACCTACTTTTCTTTAAGGATGTTGCATCTTTTAGTTTAATTGATGAACATGGATCTATTGTCCCTTGTTCTCTATCCCCAACC CCATCCCTTATATATATTTCATACTATCACATCCTCTCCCTTTCATCAAAAATCTTCAACAAAACAAAACATTAAATGATCATTCAAAAGAAAATGAATA ATCATTGTTTAGTGTCAATACTTGAGCTTGTAGAAGTTAAGTATGCAAAGAGTATTTATTGTTGTAAAATTTTGGATTATCATGGAATTTTGTTGTTGCC AATGAAGTGGAGGCATATGATTTTCTGTCAACTAGCAG
• Tissue: pods
• Gene name: LI_gene_173467;
• Additional information: details;

Expression of Ll_transcript_458534

FPKM

• PAB: 0
• PNAB: 4.2
• PS1: 2.1
• PS2: 0.3
• PS3: 0.6
• PW1: 2
• PW2: 2.5
• PW3: 0.8

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_458534

• Blastp: DNA repair protein RAD50 from Arabidopsis with 72.19% of identity
• Blastx: DNA repair protein RAD50 from Arabidopsis with 72.19% of identity
• Eggnog: Involved in DNA double-strand break repair (DSBR). The Rad50 Mre11 complex possesses single-strand endonuclease activity and ATP-dependent double-strand-specific 3'-5' exonuclease activity. Rad50 provides an ATP-dependent control of Mre11 by unwinding and or repositioning DNA ends into the Mre11 active site (By similarity)(COG0419)
• Kegg: Link to kegg annotations (AT2G31970)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019414681.1)
• Pfam: AAA domain (PF13476.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;