| Id Trinity | TRINITY_DN49948_c1_g1_i3 |
|---|---|
| Name Transcript | Ll_transcript_458541 |
| Sequence | CTATAATGAAGTAGGCTGTATAACTGCATTGAACATAATGCATAACATACTTTGTTGTTCCTTGATTCAGAAATCTCTTCCCTCTTAACATAAAAATAAT GTAATTCAGTCCATCTGATGCATTTTGTAGAAGTTTTGAGGCTTAAATAAATTTAGTAGTTGCAATTATAGTTATAAATAGGAAAAACCCCTACACAGGT CCCTTAAGTTATATTTAGGTTAATATTCGAAATCCACCATTCCTATATTCTTGATCAGTTAATGTACTAATTTGGGCCTCAATTAATTTTTAGTTGGATC CAGAGCTGGAGTTTGATCGTGAAGTATACCCTTTGGGACTTCTTCCAAATGCTGGTGTAGTTGTTGGTGTTTCTCAAAGAATGTCATTTTCAGCAAGTGC AGAATTTCCATGCTTTGAGCCATCTCCTCAAGCACAAACAATATTGCACTGCCTACTACGGCATCTTCTTCAGAGGGACAAAATTGAGGAAGCTTTGAGG CTGGCAGAGCTATCAGCTGAGAAGCCTCATTTTTCACATTGTCTAGAGTGGCTTCTTTTTACAGTATTTGAAGCAGATATATCCAGGCCAAATATGAATA AGAACCAGATCTCAATTCCTAATCATGCTAAAAGCACTCTTTTGGAGAAGACATGTGACCTGATCAGAAATTTTCCTGAGTACTTTGATGTTGTTGTAAG TGTCGCAAGAAAAACCGATGGTCGTCATTGGGCAGATTTGTTCTCAGCTGCTGGAAGATCGACAGAATTGTTCGAGGAATGCTTTCAACGTAGATGGTAT CGCACTGCAGCTTGCTATATACTTGTGATTGCTAAGCTCGAAGGACCTGCTGTCAGTCAGTACTGTGCTTTACGGTTATTACAGGCAACACTAGACGAAT CGTTGTATGAGCTTGCTGGGGAGCTGGTGAGGTTCTTGCTAAGATCTGGTAGGGAATATGACCAATCATTAACTGATTCAGATAAACTCTCTCCCAGATT TTTAGGCTATTTTCTTTTTCGTTCTAGTGATCGGAAGCAGCCATTGGATAGAAGCACCTCATTGAAGGAGCAAAGTGCTCATATTACATCGGTTAAGAAT ATTCTAGAAAACCATGCTAGTTTCCTGATGGCTGGGAAAGAGCTCTCCAAGCTTGTTGCATTTGTAAAAGGCACTCAGTTTGATTTAGTGGAGTATCTAC AGCGTGAAAGATATGGGAGTGCTCGCCTGGAGAATTTTTCTTCAGGGCTTGAACTGATAAGCCAAAAGCTTCACATGGGAACTTTACAGAGCCGGTTGGA TGCTGACTTTCTTCTGGCTCATATGTGCTCTGTCAAGTTTAAAGAATGGATTGTTGTCCTTGCTACTCTATTGAGACGTTCTGAGGTTCTTTTTGACTTA TTCCGCCACGATTTCCGGTTATGGAAAGCATATGGTACCACACTGCAGTCACACCCAGCATTTGCTGAATATCAAGATTTGCTAGAAGAACTGGAAGAGA AACTTTTGTCAGTTGCAAACATGGAACAAAAGTGAAAGTACATAATTCATTTGTGGACTGTTTGCACACATTGGTTTGATGATATGCTTGAGTAAGTTTC ACCTTGGCCCATACGAAGTTCCGGTAGCTCATGTCACACCTGAAGACCATGGTTCCTTTCCCTTTAATTTGCATAATGGGACAAGAAACTACATTTATGT GATGCCTTACCATTATCTTCATGACTAATCATTTTATTGGTGCCAATCCAATCAAATGGGAATGGTACATATAGATAGAGGTTAGTAAGTATGTGTAGAC AAGCATATGCATCTGTGAGGGTTTCGTTATTCTTTTCTCGCTTTAGCCCTCATTTTGTAATGTGTTATGTAAAAGCATCAACAAATCCATTTGTATATAT CAATTATGCTCCTGGTCAGTTCAACATTCATAGTAGAATTTATGCAACTTGCTTTTCTCTACTGAGCAAGTTCAAGATTTATTGCTGTTTACTATTTTTG TCTTTGTAACCACTATTTTCATTGACAGTACTCTAACTAAAATGTTTACTTAATCCATTTTTCAGTTTAGGATCAAAAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_173468; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_458541
| Blastp | RAB6A-GEF complex partner protein 1 from Mus with 29.43% of identity |
|---|---|
| Blastx | RAB6A-GEF complex partner protein 1 from Mus with 28.61% of identity |
| Eggnog | protein RIC1 homolog(ENOG410XT5J) |
| Kegg | - |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_003534547.1) |
| Pfam | RIC1 (PF07064.12) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |