Ll_transcript_458544

• Id Trinity: TRINITY_DN49948_c1_g1_i6
• Name Transcript: Ll_transcript_458544
• Sequence: GTCGGGGTGTTGTAGAAGTTGAGCTCGGTTCTGTTCCCATTTCCCAATCGCAACAAATCCAAATCATGGATCAAAGCTAAATCACACAAATGCTCTTCAT CTTCGATTCCTTACACTATTCTCTGCAATTCTAGATCTATAAAACTTTGATTACAACAAATCTCAACAATAATTACAAGATGTATATGGCTTATGGTTGG CCTCAGGTTATTCCTCTTCAACAAGGACTTTGTCCTTCTCAACAACGGGTTGTGTTCCTCAAAAACGTTAATCGATTGTTACTTATTGTTTCTCCTACTC ATTTTGAACTATGGAGCACTTCTCAGCATAGAGTGAGATTGGGGAAGTACATGAGAGATTCAGATTCAGTGGAGAGGGAAGGAGAAAACTTGCAAGCTGT GTGGAGCCCCGATACCAAATTAATTGCCATTCTTACTTCTTCTTTCTTTCTTCACATTTTCAAAATCCAGTTTTCGGATAAAAGAATACACATTGGAGGA AAGCAACCCTCTGCTTTGTGCCTGGCTACTATTTCTCTTTTGCTTAGTGAGCAAGTTCCTTTCGCAGGAAAGGATTTGTCTGTGAGCAATATTGTTAGTG ATAACAAACATATGTTGCTTGGACTTTCTGATGGAACTTTATACAGCATGTCTTGGAAGGGGGAGTTCTATGGGGCTTTTCAATTTGATCCATATCCTCT TGCTAGTGTTGAAGATTCTCTATTACCACGTACTCTAGACAACGGTCTTTCTCCTAATAGTCAGCCAAAGATTCTTATGCCCAACCACATTATTCCTAAT AAGTTTGAAATTAACCAACTGGAACTTTGCCTTCCATTGAGGTTGCTATTCGTCTTGTATTCCAACGGGCAACTTGTCTCATGTTCCATTAGTAAGAAAG GTTTAAAGCAAGTTGACTATATTAAAGCAGAACAGAGGTTGGCTTGTGTTGATGCTGTATGTGCTTCAGTAGCTGTTGAACAGCAAATTCTTGCTGTTGG TAGCAGAAGAGGAACAGTTGACTTATTTGATTTGGCTGAATCAGTAACACTTATACGAACAGTCTCTTTGTATGATTGGGGGTACTCAGTGGATGACACT GGCCCTGTTAGTTGCATTGCTTGGACACCTGATAACTCTTCTTTTGCGGTTGGGTGGAAGTTAAGGGGGCTTACCGTTTGGTCTGTTTCTGGGTGTCGCC TGATGTCAACAATCCGACAAATAGGTTTAAGTTCTGCATCTTCTCCAATTGTTAAGCCAAACCATGATTGTAAGTATGAACCATTGATGGGTGGTACCTC ACTGATGCAGTGGGATGAATATGGATATAGACTTTATGCTATTGAGGAGGGATCTTCAGAGAGAATTCTTTCCTTCTCTTTTGGAAAATGCTGTCTTAGC AGAGGAGTTTCAGGAACTACGTACATCCGGCAAGTAATTTATGGGGAAGACCGATTACTCATCGTGCACTCAGAAGAGAGTGATGAACTTAAAATGCTAC ATCTTAATCTTCCAGTTTCTTATATTTCTCATAACTGGCCTGTTCAGCATGTAGCGGCTAGCAAAGATGGGATGTACTTAGCTGTTGCTGGTCTCCATGG TTTGATATTGTATGATATTCGATTGAAAAAATGGAGAGTATTCGGAGATGTTACTCAGGAACAAAAGATTCAGTGTAAAGGGTTGTTATGGCTGGGGAAG ATTGTCATCGTCTGCAACTATGTTGATTCTTCTGACACGTATGAGTTGCTCTTTTACCCAAGGTATCACCTTGATCAAAGCTCATTGCTCTGTCGTAAAC CATTGCTCGCTAAACCAATGGTGATGGATGTATACCAAGATTATATACTGGTTACATATATGCCATTTGATATTCACATATTCCATCTGAAATTATTCGG TGAATTAACACCTTCAGGAAATCCAGATTTGCAGCTTTCTGCAGTCCGAGAACTTTCAATTATGACTGCAAAGAGCCATCCTGCAGCAATGCGGTTCATT CCTGACCAATTTCCAAGAAAATCTATTTCAAACAATTACATTTCACCCTCATCAGATTCATTTTCAAGGGAGCCAGCAAGATGTTTGATATTGAGGGCAA ATGGAGAGCTTTCACTTCTTGATTTGGATGATGGACGGGAGAGAACTCTTACAGATTCAGTTGAACTATTTTGGGTCACCTGTGGCCAGTGTGAGGATAA AACTAATTTGACCGAAGAAGTTTCATGGTTAGATTATGGTCACCGAGGCATGCAGGTTTGGTATCCATCTCCTGGTGCTAATTCTTTTAAGCAGGAAGAT TTCTTGCAGTTGGATCCAGAGCTGGAGTTTGATCGTGAAGTATACCCTTTGGGACTTCTTCCAAATGCTGGTGTAGTTGTTGGTGTTTCTCAAAGAATGT CATTTTCAGCAAGTGCAGAATTTCCATGCTTTGAGCCATCTCCTCAAGCACAAACAATATTGCACTGCCTACTACGGCATCTTCTTCAGAGGGACAAAAT TGAGGAAGCTTTGAGGCTGGCAGAGCTATCAGCTGAGAAGCCTCATTTTTCACATTGTCTAGAGTGGCTTCTTTTTACAGTATTTGAAGCAGATATATCC AGGCCAAATATGAATAAGAACCAGATCTCAATTCCTAATCATGCTAAAAGCACTCTTTTGGAGAAGACATGTGACCTGATCAGAAATTTTCCTGAGTACT TTGATGTTGTTGTAAGTGTCGCAAGAAAAACCGATGGTCGTCATTGGGCAGATTTGTTCTCAGCTGCTGGAAGATCGACAGAATTGTTCGAGGAATGCTT TCAACGTAGATGGTATCGCACTGCAGCTTGCTATATACTTGTGATTGCTAAGCTCGAAGGACCTGCTGTCAGTCAGTACTGTGCTTTACGGTTATTACAG GCAACACTAGACGAATCGTTGTATGAGCTTGCTGGGGAGCTGGTGAGGTTCTTGCTAAGATCTGGTAGGGAATATGACCAATCATTAACTGATTCAGATA AACTCTCTCCCAGATTTTTAGGCTATTTTCTTTTTCGTTCTAGTGATCGGAAGCAGCCATTGGATAGAAGCACCTCATTGAAGGAGCAAAGTGCTCATAT TACATCGGTTAAGAATATTCTAGAAAACCATGCTAGTTTCCTGATGGCTGGGAAAGAGCTCTCCAAGCTTGTTGCATTTGTAAAAGGCACTCAGTTTGAT TTAGTGGAGTATCTACAGCGTGAAAGATATGGGAGTGCTCGCCTGGAGAATTTTTCTTCAGGGCTTGAACTGATAAGCCAAAAGCTTCACATGGGAACTT TACAGAGCCGGTTGGATGCTGACTTTCTTCTGGCTCATATGTGCTCTGTCAAGTTTAAAGAATGGATTGTTGTCCTTGCTACTCTATTGAGACGTTCTGA GGTTCTTTTTGACTTATTCCGCCACGATTTCCGGTTATGGAAAGCATATGGTACCACACTGCAGTCACACCCAGCATTTGCTGAATATCAAGATTTGCTA GAAGAACTGGAAGAGAAACTTTTGTCAGTTGCAAACATGGAACAAAAGTGAAAGTACATAATTCATTTGTGGACTGTTTGCACACATTGGTTTGATGATA TGCTTGAGTAAGTTTCACCTTGGCCCATACGAAGTTCCGGTAGCTCATGTCACACCTGAAGACCATGGTTCCTTTCCCTTTAATTTGCATAATGGGACAA GAAACTACATTTATGTGATGCCTTACCATTATCTTCATGACTAATCATTTTATTGGTGCCAATCCAATCAAATGGGAATGGTACATATAGATAGAGGTTA GTAAGTATGTGTAGACAAGCATATGCATCTGTGAGGGTTTCGTTATTCTTTTCTCGCTTTAGCCCTCATTTTGTAATGTGTTATGTAAAAGCATCAACAA ATCCATTTGTATATATCAATTATGCTCCTGGTCAGTTCAACATTCATAGTAGAATTTATGCAACTTGCTTTTCTCTACTGAGCAAGTTCAAGATTTATTG CTGTTTACTATTTTTGTCTTTGTAACCACTATTTTCATTGACAGTACTCTAACTAAAATGTTTACTTAATCCATTTTTCAGTTTAGGATCAAAAA
• Tissue: pods
• Gene name: LI_gene_173468;
• Additional information: details;

Expression of Ll_transcript_458544

FPKM

• PAB: 2.4
• PNAB: 8.5
• PS1: 9.5
• PS2: 6.1
• PS3: 8.6
• PW1: 7.2
• PW2: 8.5
• PW3: 5.7

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_458544

• Blastp: RAB6A-GEF complex partner protein 1 from Mus with 24.56% of identity
• Blastx: RAB6A-GEF complex partner protein 1 from Mus with 24.77% of identity
• Eggnog: protein RIC1 homolog(ENOG410XT5J)
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_003552406.1)
• Pfam: RIC1 (PF07064.12)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;