Ll_transcript_456133

• Id Trinity: TRINITY_DN49956_c4_g1_i1
• Name Transcript: Ll_transcript_456133
• Sequence: AGCAGAACACAGTGACTTTTCTTCACTGACCAAATGGGTTTCACAAAGCGCACTTCTCTTCTTCAAAATTCACTTTCTCTTCCTCATTCCCTTTCATTCT CTTCTCAACCTCTTCAAATTCCACACCAACATCTTCAAAATCTTCAAAAGCTTCATTCTTTACTCGACCATGGTCACATCATTCCCGCTAGAAGGTTCCT CAATTCCTTTCTCTTTTCCAAAACCCCTTTTTTCTGTTCCCCCACTCAACTTCATACCCTTATCTCAAAACCCATTTTCTCAGATACCCTTTTATACGTT GTTTCTTCTGTTCCCACTACGATCAATGATGCTACACATTTATACTATTCCATGGTCAAAGACGGTTTTACCCCTTCAATTGCTTCTGTTAATCGATTGC TCAAAACCCTAGCTTCTGGGAAGCGGTTTCATCAAACCCTTGTTGTGTTTTCGAAGATTGCGGGTTCTGGTGTTAGACTTGATGTTGGGTCGTATGAAAA AGCTGTTCTTGCTGCTGTTATGTTGAAGGATGTGGATAAGGGTTTTGGGTTTATGAGATCGATGGAGAAAGAAGGTTTGAGTCCTTCTGTGTTTGTGTAT AATTTGGTGATGGGTGGGTTTTGTAAAATTAGGAAGATTAAGAATGCTCGTAAAGTGTTCGATGAAATGTTTGAGAGAAAGGTGGTCCCGAATACGATTA GTTTTAATACGATGATTGATGGGTATTGTAAGGTGGGTGATATAGATGAAGGTTTTAGGTTGAAGGAGAGAATGAAGAGTGAGGGTGTTGAGGCTAATGT TGTTACTTATAATTCTTTGTTAACTGGTCTTTGTGATTCTGGAAGGATGGAAGATGTAAGGAATGTGTTGCTAGAGATGGAGGTTAACGGATTTTTGCCT GATGGGTTTTCGTGTGTTATATTTGATGATCGTCAATCAGGTGATGCTGCTGCATTGGATGAGAACGTGTTTGGTAAAGGAGAAAGAATTGACATGCATA CTTATTGTATTTTGTTGAATGGATTGTGCAAGGTAGGAAGGGTTGAAAAGGCCAAGAAGGTTTTGGCCAAGCTAGTAGATAATGGAGTTGTTATTCCCAG CAATGTACCTTATACTACATTAGTAAATGCATATTGCCAAGAGGGTGACATGAAGAAAGCTATACTTACAATTGAAGAAATGGAAGAACGAGGGTTGAAG CCTAGTAGTGTCACTTTCAATACCCTGATTAACAAGTTATGTGAAACAGATGAGATGGACGAGGCTGAGAGGTGGATTACGAGGATGATAGAGAAGGGTG TTTCCCCCACGGTGGCGACTTATAACCCTTTGATTAATAGTTATGGCAAGATGCACCATTTTAGCAGGTGTTTCGATATTCTCGAGGAAATGGAAAAGAT TGGGTTAAAGCCTAATGTCATAAGTTATGGTTCTTTAATAAATTTTCTATGCAAAGATCATAAAATTGTTGATGCTGAGAATGTTCTTGCAGATATGGCA GGACGTGGGGTTTCTCCAAATGCTGAAATATATAATATGCTAATCGAAGCTAGTTTCTCAATGAATAAATTGGAAGATGCCTACAGATTTTTCGATGAAA TGATAAAAAAATGGAATAGATCCAACTATCGTGACATTCAATACACTGATAAATGGACTTGGAAGAAATGGAAGGCTAAAGGAAGCTGAGGATTTGCTTC TCCAAATGACTAGCAAGGTGGACCAGGCAGAGACGTGGGTTAAGAGGATGATAGAGGATGGTGTTTCCCCCACAGTGGAAACTTATAACTCTTTGATTAA AGGTTATGGTCAGATGAAGCATTTTGTGAGGTGTTTCGAGATTCTCGAGGAAATGGAAAAGATTGGAATAAAGCCTAATGTCATAAGCTATGGTTCTTTA ATACATTGTCTATGCAAAGATCATAAACTTCTTGATGCTGAGATTGTCCTTGCAGATATGGCAGGTCATGGGGTTTCTCCTAATGCAGAAGTATATAATA TGGTCATCGAAGCGAGCTGCTCGATGGGTAAATTGAAAGATGCCTTCAGGTTTTTTGATGAAATGAAGAAAAATGAAATAGATCCAACTCTTGTGACATA CAATATACTGATAAATGGACTCGGAAGAAATGGAAGGCTAAAGAAAGCTGAGGATTTGTTTCTCCAAATGGCTAGTAAGGGGCTTAGTCCAGATGTAATC ACATACAATTCCCTGATATTAGGATATGCCCAGTCGGGAAACACCGAGAAAAGCCTTGAATTGTATGATGATATGAAAAGGGTAGGCATTAAACCTACAA TCGGAACTTTCCATTCTTTGTTGTACGCATGCAGGAAGGACAGTGTGGTGACAGCTGAGAAATTTTTTCAAGAAATGTTACAAATGGATTTGATTCCTGA TCGAGTTGCGTATAATGAAATGATTTACTGTTATGCCGAAGAAGGAAATGTTTCGAAGGCAATGTCTTTGCACCAGCAGATGGTTGATCAAGGAGTTGAT GCTGACAAAGTTACTTACAACTGCTTGATTCTAGCATACCTTCGAGATAGAAGGGCTTCAGAAGTAAAGCATCTTGTTGATGATATGAAGGCTAAAGGAC TGGTTCCTAAAGCTGATACATATAACATTCTGATTAAGGGACACTGCGACTTAAAAGACTTCAACGGTGCCTATTTTTGGTACCGGGAAATGTTCGACTG GGGTATGCTTTTAAATGCGAACTTGTGCTATCAGCTTATATCTGGACTTGGAGAGGAGGGAATGCTGCAAGAGGCTCAATTTGTATCCTCAGAATTGAGT AGTAGAGAGCTGAACAACTAGAATATTGACAACAAATCATCGCCCGAATCTTCAACTGATATGATAGTTGAAGAGGAAGGAAGGGAGAGGGGGAAACTTT AGACTCATCTCACAAGTGCATTTCATGGCTCTCGGGTCTTTCTTTATTCTTCATTTTTCTCCAAAACTTAACTCGTAAACTGACCCTTAAATGTCACTCT ATGCTATCAGCAGAGGAGTGAATGCTGTACATTGCAACATCAAGATTTAAATGAAGTTTGTGCTGAAAAGAGGTTTCTACATAATGCTGAGAAGGTAAGG CTGCAAGATTGAAGATTCTCAAATTGTCTCCTCAAAATGGGTGGTGAAAAAAGAAAGTCCTAACCAATGGACATTTTTAATCATACTTTATAGCTCATTA TTTATATGTGAGGAAAGAGCTTAATAAAGTTTGAAGGAAAGTTAAATATGAAAAACTTATCTCAAAATCTATTTTGAAGTGTGGTAATTGTCTACTTGTA TAAACTAGTTTTCAAAGTTAAATAATCAAATTTTGAAATATCGACTTCAAAG
• Tissue: pods
• Gene name: LI_gene_173537;
• Additional information: details;

Expression of Ll_transcript_456133

FPKM

• PAB: 0
• PNAB: 0
• PS1: 0.3
• PS2: 0
• PS3: 0.1
• PW1: 0.3
• PW2: 0.7
• PW3: 0.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_456133

• Blastp: Pentatricopeptide repeat-containing protein At5g12100, mitochondrial from Arabidopsis with 41.89% of identity
• Blastx: Pentatricopeptide repeat-containing protein At5g12100, mitochondrial from Arabidopsis with 42.15% of identity
• Eggnog: Pentatricopeptide repeat-containing protein(ENOG410Z7Z7)
• Kegg: Link to kegg annotations (AT5G12100)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019456897.1)
• Pfam: Pentatricopeptide repeat domain (PF13812.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;