Ll_transcript_457242

• Id Trinity: TRINITY_DN49980_c0_g3_i1
• Name Transcript: Ll_transcript_457242
• Sequence: CACGAATGAAGTGTTTGATAGCGAAAAGGGGCAAAAGATAACTATCTCTCTCTTTCACCCAAATTCTCAAACCCTAATCGAATGTACGTTCGATTATGGC GTCGGAGAACGCTTCTCGATCGAATTCCGCTGCTGATTCTTACATTGGCAGCTTGATAAGCTTGACATCAAAGAGCGAGATCAGATACGAAGGTGTTTTG TATAACATCAACACCGAAGAATCCAGTATTGGACTCAGAAACGTGCGATCTTTTGGAACAGAAGGAAGGAAAAAGGATGGTCAACAAATTCCTCCTGGTG ACAAGGTTTATGAGTATATACTGTTTCGTGGATCTGACATCAAGGATTTACAGGTTAAATCTTCACCACCCGCTCAGCCTACTCCACAAGTCAGCCATGA CCCAGCTATTATCCAGTCTCACTATTCTCGCCCAGTCACCACCTCTACAAGTCTGCCTAATGTTGCGAGTGGGCCTTTGGCTGATCTTAGCTCTCATGCC ACACAACTTGGACTCCATGGCTCAAACTTCCAAGGGCCTTTGCCTTTGTATCAACCTGGAGGGAACATAGGGTCATGGGGAGCTTCTCCACCTGCCCCAA ATGCAAATGGTGACGGGCTAGGTATGCCAATGTATTGGCAAGGGTATTATGGTGCTCCAAATGGGCTTCCTAATTTTCACCAACAATCTTTGCTTCGACC ACCTCCTGGTTTATTGATGCCTCCATCTATGCAGCACCCAATGCAGTACCCAAATTTTAGTCTCTCTTTATCATCTGGATCTTCAAATTTACCTGAATTG CCATCATCATTACTACAAGTCAGTAATAGCACCTCTAGTGTCACATCTGCTTCTTTATCACCATCAAATTTGTATCCGGCACCTTCGTCTTTGCCAGAAG CCCCCTCTGCTTTGCCTGTGGCCCCTTCTGTGTTGCTTCCTGCACTTTCTGCTTTGCCCCCGACACCTTCTACTTTATCTCATGCACCTTCTGCATCACT AGCTTTTGAAACTTTTCCCCTGTCATTGACAGATAAGGCTCCAAATGTTTCACTTCCATCAGTCACACCAGCTGCTAACTTGCCATCACTGACTCCTTTG ACCAATTCTGGTTCAGAAATGAATGCTACAGTGCCACCAATCTCCAGTAAACCTAATGCAATTTCAGGTTCAAGCTTGGCATTTCAAACTGTATCTCAGT TGTCCCCTTCAGTTGTTGGATCATCAAATTCTATCAGTACAGAAACACCAGTCCCTTCTCTGGTAACTCCAGGTCAATTATTGCAGCCTGGTTCAACTGT GGTTTCTTCAGTTCACCG
• Tissue: pods
• Gene name: LI_gene_173725;
• Additional information: details;

Expression of Ll_transcript_457242

FPKM

• PAB: 9.6
• PNAB: 14.5
• PS1: 14.9
• PS2: 10.9
• PS3: 11.3
• PW1: 11.5
• PW2: 10.8
• PW3: 9.7

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_457242

• Blastp: Protein decapping 5 from Arabidopsis with 54.48% of identity
• Blastx: Protein decapping 5 from Arabidopsis with 69.76% of identity
• Eggnog: LSM14A, SCD6 homolog A (S. cerevisiae)(ENOG41122RA)
• Kegg: Link to kegg annotations (AT1G26110)
• CantataDB: Link to cantataDB annotations (CNT0001887)
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019461368.1)
• Pfam: Ataxin 2 SM domain (PF14438.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;