Ll_transcript_458387

• Id Trinity: TRINITY_DN49991_c2_g1_i8
• Name Transcript: Ll_transcript_458387
• Sequence: TGTCAAGTATGAATGGCAGGGGAGACGAGAGGGAAGAGAAAACAGCGAGATCTTCACCTTGGCAACGAGATAAAGCATCGACTACTCGATTCGAGACATA TGTCGAGGCGTATTGCATGCGAGCAGACATTTTATATCTGAAGTATGATAGAGGGTGTCCATTCTGAGACAACACAACACCAATGGCTACACCAGATGCG CCTGTTTCCATGTCAAAAGATTGAGAAAAATCGGGAAGGCACAACACCGAATTTTTTATTATAGCTGCTTTTAAATTTGTAGCCGAATGAGCCTCTGATG ACCATATAATTTTTTTTTGAGTAGGTCAGTGAGAGGAGCGGTGAGTGTGGAGTAGCTTTTAACGAATTTTCGATAAAAATCGGTAAGCCCAAAAAACCTC GAAGTGTCGTGAGTAAACGTGATAGTGACTAATCTAACATAACTTGTATCTTGTCGAGATCCGGTTGGACTCCCCCGAACGAGGTAATATGACCAAAATA GGTCAGAAATGTCACCCCAAAGATACATTTTGACAACTTGGCATAAAACTGATTAGACATCAATAGGTCCATCATAATATTTAAATGGTTTAAAAGAGAA ACTAAAGCAGAACTATAAACCAAGATATCATAAAAGAAACAAGGACAAACCGTCGTACGTGAGGCCTCAGTAAATGATTCATGATCGCTTGAAAAGTAGA TGGTGCACTGATAAGTCCAAATGACATCACTAGGAACTCGTAATGGCCATCAAAGGTGTGAAATGCAGTCTTATGAGTATCTGAAGCTAGTACTCTGATC TGATGGTAGCCATAATGCAAATCAAGTTTTGAGAATATTCGAGCATCTCCCACTTTATCCAACAACTCCTCAATAGTGGGTATAGGAAAACGATCAGGGA AAGTAATCGTGTTTAATGCTCTATAATCCACACCGAACATCCATTTGCCATCCTTTTTTCTCACTAGCAAGACTGGTGAAGAAAAAGGACTAGTGTTGGG AATCACGATTCCAACCTGTAACATCTCATGAAGCATTGATGTCATAATTTCTTTCTAAAAATGGGGGTATCTATAGGGTTTGATGTTCATTGGGGTAAAT TTTGGGAGGAAAGGAATATAGTGATCATGTGGTCGAGGTGGTGGTAAAGTAGTGGGTATGGAAAAAACAGAGTCATAGTGTTCGAGTAGGGTTTGTATTT GGGGGTGAGTGATGGGAGTTGGTATGGTTGGGTCTAGGGGTAGAAGTGTAATGGTGTGGAAAGTAGTAATGCTATCAGTTTGGTAGAGAAATCGGACACA ATGGGACCGAGGGTTCTCATCCATTTGATGCCCAATACAACATTAGCTCCCTTAATAGGAAGCAAGTAAAAAAGGAATAAGGAATTCCTTGTTTTGCAGA GTGATGGGGATATTGTCACATAAGCCACTGCAATAAATATGGGCCCCATTACCAACCATAACCGGAAAATTTGTAGTTTATGTGATGGGAAGGCGTAGAA AACTAGCAATCCGATTCTGGAGTATGTTATGAGAGCTCCTCGTGTCTACCAGAACCGTCACTTGGTGACCCAAAATGGTGCCTGAAACCTTTAAAAGTTT TTGGGAAAATCTTGATGCAAAGGGCCTGGTCAGAGATGTGAAAATGGATCAGGTCTTCATTAGCAGGGTCGGGATTAACCAACTCAGGGTAATCTGTTGG AAAAACCGAAGAGCGAATGGTCGTGTCAATAGATGGGAATAAATCCTCTTCAATCAACATTAGAAACTTTTTATATTGACACCTATGACCTGGGTGAAAC TTATCATCACATGTGTAGCACAACCCTTGCGGTCGGCACTCGTGCGTCTGGGCAACAGAGAGATGACGAACAAGAAGGGTAGGTGATCCAGTAGGTTGTG GAAGGGGTACTGGACTGGTTGGTTTTGGAAATGTAGGTTGGGGGCCATAAGAGGGAAATTTGGGCGGTTTGTGAGAGAAACGACCAGCATCATGAAGTTT AGCCTCAACCAACTTAGTTAATCCTAGCGCCTAAAAAATAGTTTTGGGGCACAAGATAGCGATCTCCCGCC
• Tissue: pods
• Gene name: LI_gene_173818;
• Additional information: -

Expression of Ll_transcript_458387

FPKM

• PAB: 0
• PNAB: 0.1
• PS1: 0.3
• PS2: 0.2
• PS3: 0.2
• PW1: 0
• PW2: 0
• PW3: 0

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_458387

• Blastp: Transposon Ty3-G Gag-Pol polyprotein from Saccharomyces with 48.82% of identity
• Blastx: Retrovirus-related Pol polyprotein from transposon 297 from Sophophora with 43.97% of identity
• Eggnog: -
• Kegg: Link to kegg annotations (YGR109W-B)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019459949.1)
• Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) (PF00078.26)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;