Ll_transcript_531444

• Id Trinity: TRINITY_DN50001_c0_g1_i2
• Name Transcript: Ll_transcript_531444
• Sequence: GTTCAACTGTGAAGTGATTCGTTTGATTTGTTTTCCGGCCTATGTTGTCGTATTGGGCATGAAGAGTTGATCGGCTGTTTTAAACCGAACATCAATAATG ATTCTTTCTGCTCTTTTAACTTCGGTTGCAATTAATCTTGGCCTGTGTTTTTTATTTTTCACCCTATATTCGATCTTGAGAAAGCAGCCCGGTAACATCA CTGTATACGCGTCGCGCTTAGTTGTCGAAGGAAAAGTTAAAGAAGGTGGTGAGTTTAACTTGGAACGGTTGTTACCTACTGCTGGCTGGGTGAGAAAGGC GTGGGAGCCTTCGGAGGAAGAATTTTTGTCGAATTCAGGCTTAGATGCTTTTGTCTTCATGCGCATATTTATCTTTAGTTTAAAAGCATTTGCTTTTGGT GGAATCATTGGGATGTTCGTTCTACTTCCGATCAATTATTCGGGGAGTCAGCTCGAAGATTATTCGGATTTTCAACACAAGTCTTTGGACTTGTTCACTA TTGCTAATGTTAACAATGGTTCGAAAAGGTTATGGATCCATTTTTGTGCTGCATATGCTTTCACCGGAGTTGTCTGCTATCTTCTTTATTACGAGTATGG GTACATTTCATCAAAGAGAATTGCTTGCTTATATTCATCCAAGCCTCAGCTTCATCAGTTTACAATATTAGTTCGTGGTATACCCGTTCCACGTGGAAGG ACATGTAACGATGTTGTTGAGCGCTTTTTCCAAGAGTATCACCCTTCCACATATCTTTCACATTCGGTGGTTCGTCGAAGCAGCAAACTTCAAAATTTTA TTAATGATGCAGATAAACTGTACAAAAGACTTGCCAATCTAAAAAGTAAAAAGGATGTTCCTCAAGGGCACATACGCGATGGCTTTTTGGGAGTTTTCGG GCCTAAAGTTGATATTTTAGATCACTATGAAAGGAGATTGAGAAACATAGAAGATAATGTGAGAATAGAACAGTCTTATGTGGCAGCAAAGGATGTTCCT GCCGCCTTTGTCTCGTTTAAGACACGATTTGGTGCTGCGATAGCTCTAAACATTCAAGAAAGTATCAATCCCACAGAATGGACTTGTGAGCAAGCTCCTG AGCCTCATGATGTTTATTGGCCTTTGTTTACCGTTTCATTCATTAGAAGATGGATCAGCAAGCTGGTGGTTTTTGTTGCTTGTGTTTATCTTACAGTTCT GTTTCTAATACCGGTCGCAATAGTACAAGGTCTTACCCATCTTGATCAATTGATAACCTGGTTCCCTTTTCTGAAAGGCATACTAAGACTGTAAGTGGGA AATCTTACCCATATATGAGTGCATGGATCAGAGTAAGATCATAATATATGTTAGAATATATGGAATATTTCGTAATATATCTTTGAACGTTTTAGACTAT CCGAGATTATCCTATTAGGATTTATTTCCTGCTTATACTCCCTGATTTGTTTCCTTATTCGATTAGGACTCTCTCGTTTCGTATCATCTCATCACATTGT CATCATATTAGTATCAATATCATTCACATATTATGAGCCTCTATTCTCTCTTTTACTCATTCCTTACCAAAAACCCTCTAATTTAACATGGTATTGAGGA GTTAGCCGTGCTCTGCGACGTGTTCTGTCATCACTTTGCTGTTATGTAGCATAGAATACGGAAAAACTTTAAATTAGTCTTTCAACTCTACTAAAAAAAC CTACATTCCTAGGTTGTCTTCTCCTTTCATATCCTTTTGTAGATGCTGTCTTACTGAATTCGTTTACGATTTTAAATAGACTCGTATTTTCATTACCTGT GACTCACTATTTCTTTCATCATGTAGATTGCATTTATATGCTTATATACTTATGCCTTTTGTTTATGAGAGATACCTATTTTTTTAAATAAATGAAGAAA GATCGGTCTTATGTTACATGCCAATGTTTCTTTTATTTTCTCCGGCTTCTGGCAGTATTGCTTGTATTAATACTTCATCCTATGTAGAAATCTTAAATAA ATTTCTGTGTCATATCGTCTTCTGGAAATACATGATTTTCTTTCTTAAACGGTTGACTTATGTTTATAATTGTCGTCCTAGAGTAGCGTTTATTGTTTTC GCAATGACTCTTTCCATAACTGATGTAGAGTTTCCGAATATTTGTTTGCAGGTCATTTGTGAGCCTAGTAGTAACAGGATACCTTCCGAGTTTGATTCTT CAGATGTTTCTGTCCTTTATTCCACCTGTTATGGTTATGCTTTCATCTCTGCAAGGATCCATTTCATGGAGTCTGATACAAAAAAGTGCATGTACCAAAG TATTATTATTTTCCATATGGAACATTTTCTTCGCAAATGTACTATCGGGTTCAGCTCTTTATCGAGTGAACGTTTTTCTTGAGCCGAAAGATATTCCCAG AGTATTAGCTGAAGCTGTGCCATCACAGGCGTCATTCTTCATCGCGTATGTTGTGACAACTGGATGGACCACTATAGCATCAGAGCTCTTTCAATTGCCT AAACTTATTTTCAATTTCATAAATAGAATTTTCAGAAGAAAAATTGGTGACGGTTTTGAGCCCCCATCAATTCCTTACCATAGTGAAATTCCGAGGATTC GTCTATTTGCTCTTCTCGGTGTAACATATTTCATCCTTGCTCCACTGATGCTGCCATTTCTCCTGGTCTACTTTTGTTTGGGATACATCATTTACCGCAA TCAGCTGCTAAAAGTATATGTGCCAAAGTATGAGACTGGAGGAGGGTATTGGCCTACAGTACACAACTCTACAATTTATTCATTGGTACTTATGCATGTA ATAGCCATCGGCATTTTCGGGTTGAAGAAGCTTCCTCTTGCATCTGCATTGACTGTTCCTCTTCCAGTTCTCACACTTCTATTCAACGAGTACTGCCAGA AACGGTTCTTACCCTTATTCAAGGACTATCCTGCCGAGTGTTTGATTAAGAAAGACAGAACAGATCAAAATGAGCAGAATATGCCAGAATTCTATGATAA GTTAGCCAATGCCTATAATGATCCTGCTCTGTTGCCAACAAAATATTCTGAAAGTTCTGATAGTCATACCTCTCCACTACTTCATGGTTCTGCAACTTAA GTTCATAAACCGTATATTCCGATGGTGCCGCGTCGGTTGCAACTGTATAGCTGCACTCACTTTGTAACTTCCTTTCAGGTTTGATTTGGTGGTCCTTGGT GTAACATGTCTGTTGTATTGTAAATTATTTGGATTAAGAATGTAAGGTTGTAACAAGTATGGAGAAATTCAATTCTGGTATGGGTAATTAGTAATTACCA TACATTTTTGGTTAGCATCATAGTGAAAAGAAAGACTATAGCTAGTTATAATTGTAACAGAGATTGGTTGGAGAAAAAAGGAGTTGTCTTTGTTAGTGCA TGCATGCGGCTTGTGAGTTCCTCGAGTTCATCAAACAAATTGAGTACAAAGTAATGGATCAACTGAATAAAACTCCGGCAATGATATCTCTATTGTCCTT ACTAAAATGAGCTATGAGGCTCATAGGAATGTGTTATTGAAAGTGTTGAATCAAGCCCATATCAAATTAGAAATCCAGCCAAAACTATACAGCAATAATA TGGATCACCTGTCCCAAAATGATTGTCCTCGTATTCCTAGTCAATCAACTTTCTCC
• Tissue: pods
• Gene name: LI_gene_173859;
• Additional information: details;

Expression of Ll_transcript_531444

FPKM

• PAB: 0.2
• PNAB: 0.4
• PS1: 0.4
• PS2: 0.2
• PS3: 0
• PW1: 0
• PW2: 0.1
• PW3: 1.3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_531444

• Blastp: CSC1-like protein HYP1 from Arabidopsis with 60.4% of identity
• Blastx: CSC1-like protein HYP1 from Arabidopsis with 60.4% of identity
• Eggnog: transmembrane protein 63C(COG5594)
• Kegg: Link to kegg annotations (AT3G01100)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019452941.1)
• Pfam: Late exocytosis, associated with Golgi transport (PF13967.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;