| Id Trinity | TRINITY_DN50001_c0_g1_i3 |
|---|---|
| Name Transcript | Ll_transcript_531445 |
| Sequence | GTTCAACTGTGAAGTGATTCGTTTGATTTGTTTTCCGGCCTATGTTGTCGTATTGGGCATGAAGAGTTGATCGGCTGTTTTAAACCGAACATCAATAATG ATTCTTTCTGCTCTTTTAACTTCGGTTGCAATTAATCTTGGCCTGTGTTTTTTATTTTTCACCCTATATTCGATCTTGAGAAAGCAGCCCGGTAACATCA CTGTATACGCGTCGCGCTTAGTTGTCGAAGGAAAAGTTAAAGAAGGTGGTGAGTTTAACTTGGAACGGTTGTTACCTACTGCTGGCTGGGTGAGAAAGGC GTGGGAGCCTTCGGAGGAAGAATTTTTGTCGAATTCAGGCTTAGATGCTTTTGTCTTCATGCGCATATTTATCTTTAGTTTAAAAGCATTTGCTTTTGGT GGAATCATTGGGATGTTCGTTCTACTTCCGATCAATTATTCGGGGAGTCAGCTCGAAGATTATTCGGATTTTCAACACAAGTCTTTGGACTTGTTCACTA TTGCTAATGTTAACAATGGTTCGAAAAGGTTATGGATCCATTTTTGTGCTGCATATGCTTTCACCGGAGTTGTCTGCTATCTTCTTTATTACGAGTATGG GTACATTTCATCAAAGAGAATTGCTTGCTTATATTCATCCAAGCCTCAGCTTCATCAGTTTACAATATTAGTTCGTGGTATACCCGTTCCACGTGGAAGG ACATGTAACGATGTTGTTGAGCGCTTTTTCCAAGAGTATCACCCTTCCACATATCTTTCACATTCGGTGGTTCGTCGAAGCAGCAAACTTCAAAATTTTA TTGTAAGCATTTTCTGTATCGCTGGAAGAGTATATCTCCTGAATACGTACATATTATCTGTCAATTTTCGATTAAATAGAAGCTTTTTGTCCTGTTAAAG AAGTCATTAATAGTGAAGAAGTATAACAATGGAGGATGTAAAAGAAACCAGAGAAAAAGGAAAGTAACTCGCGAGAGCAAACCAGTCTTACACAAAGAAA CTCATGAGAGCTCTTATGAGCTCAATCGCCGTGTCCAACAAAACTAGCCTATCCCGTATGCTCTGGTCTTCTGCTCCGACGAATGCATCTCACCCACAAT TTCAAAGCACCAAATTCATCTTGCTACTTCCAAGTTAGGAAAGCATATCCAATGTTCTTATTGCCTGAAAAACACAAATTACAATAAGTTATTCCATACA TACGTAATTAGTTTCCTTCCCCATATAATGTAGGAAATTTTTATTTTACTCCCATGCCAATGATAGCATGGCATTATATAAGTATGTATCATGTTAGAAT AAATACTGTTATGTCATGAATCTACAGTCTAACAAGTAACTTCAGTGTGGCATATTTTCGTACTGAATATTGAGAATCGTGTCTTGGAGATTGAAACCAA TTCTATACGCATTAGGCAACAACTTAAGCTTTAAGGTCGACAACATGTGCCCTATTTTTATAATACTTGAGTTGCTGTTGAGACCAGAATGGGTTGTTTT TAAGTGGGTTTATTAGATATGAATCATGTTTCCTCAGATAAACTGTAAAGTTTAAGGTTCATCGATGTTTTGTTAGGCTTTCCCAAAATAGTGTTCGTTT TCTTGCTTTGTTCTTTGTAGAATGATGCAGATAAACTGTACAAAAGACTTGCCAATCTAAAAAGTAAAAAGGATGTTCCTCAAGGGCACATACGCGATGG CTTTTTGGGAGTTTTCGGGCCTAAAGTTGATATTTTAGATCACTATGAAAGGAGATTGAGAAACATAGAAGATAATGTGAGAATAGAACAGTCTTATGTG GCAGCAAAGGATGTTCCTGCCGCCTTTGTCTCGTTTAAGACACGATTTGGTGCTGCGATAGCTCTAAACATTCAAGAAAGTATCAATCCCACAGAATGGA CTTGTGAGCAAGCTCCTGAGCCTCATGATGTTTATTGGCCTTTGTTTACCGTTTCATTCATTAGAAGATGGATCAGCAAGCTGGTGGTTTTTGTTGCTTG TGTTTATCTTACAGTTCTGTTTCTAATACCGGTCGCAATAGTACAAGGTCTTACCCATCTTGATCAATTGATAACCTGGTTCCCTTTTCTGAAAGGCATA CTAAGACTGTAAGTGGGAAATCTTACCCATATATGAGTGCATGGATCAGAGTAAGATCATAATATATGTTAGAATATATGGAATATTTCGTAATATATCT TTGAACGTTTTAGACTATCCGAGATTATCCTATTAGGATTTATTTCCTGCTTATACTCCCTGATTTGTTTCCTTATTCGATTAGGACTCTCTCGTTTCGT ATCATCTCATCACATTGTCATCATATTAGTATCAATATCATTCACATATTATGAGCCTCTATTCTCTCTTTTACTCATTCCTTACCAAAAACCCTCTAAT TTAACATGGTATTGAGGAGTTAGCCGTGCTCTGCGACGTGTTCTGTCATCACTTTGCTGTTATGTAGCATAGAATACGGAAAAACTTTAAATTAGTCTTT CAACTCTACTAAAAAAACCTACATTCCTAGGTTGTCTTCTCCTTTCATATCCTTTTGTAGATGCTGTCTTACTGAATTCGTTTACGATTTTAAATAGACT CGTATTTTCATTACCTGTGACTCACTATTTCTTTCATCATGTAGATTGCATTTATATGCTTATATACTTATGCCTTTTGTTTATGAGAGATACCTATTTT TTTAAATAAATGAAGAAAGATCGGTCTTATGTTACATGCCAATGTTTCTTTTATTTTCTCCGGCTTCTGGCAGTATTGCTTGTATTAATACTTCATCCTA TGTAGAAATCTTAAATAAATTTCTGTGTCATATCGTCTTCTGGAAATACATGATTTTCTTTCTTAAACGGTTGACTTATGTTTATAATTGTCGTCCTAGA GTAGCGTTTATTGTTTTCGCAATGACTCTTTCCATAACTGATGTAGAGTTTCCGAATATTTGTTTGCAGGTCATTTGTGAGCCTAGTAGTAACAGGATAC CTTCCGAGTTTGATTCTTCAGATGTTTCTGTCCTTTATTCCACCTGTTATGGTTATGCTTTCATCTCTGCAAGGATCCATTTCATGGAGTCTGATACAAA AAAGTGCATGTACCAAAGTATTATTATTTTCCATATGGAACATTTTCTTCGCAAATGTACTATCGGGTTCAGCTCTTTATCGAGTGAACGTTTTTCTTGA GCCGAAAGATATTCCCAGAGTATTAGCTGAAGCTGTGCCATCACAGGCGTCATTCTTCATCGCGTATGTTGTGACAACTGGATGGACCACTATAGCATCA GAGCTCTTTCAATTGCCTAAACTTATTTTCAATTTCATAAATAGAATTTTCAGAAGAAAAATTGGTGACGGTTTTGAGCCCCCATCAATTCCTTACCATA GTGAAATTCCGAGGATTCGTCTATTTGCTCTTCTCGGTGTAACATATTTCATCCTTGCTCCACTGATGCTGCCATTTCTCCTGGTCTACTTTTGTTTGGG ATACATCATTTACCGCAATCAGGTCTGCGATATATATGCACTTCTTTATTTTTTTCTTGTGTAATGCAATTTTACGACAAGTGGCAAGCCCGTTTGTGAA AAATGTTCGCTGTGCTTAACCAAGTATCGATGAAATTCAAAGTACATAAAGATCATTAACATGTTTGTCACCCATTTTCTTCCGCTTTCGGAAACTAACG CATTCACTGCCTTTTCAACCAACCATTTCTTCTACTACTGTCCTTGACCTTAGCATCCTTAGCCCTGCATGAAATTCTGTGATCATTACTTATATTTTCA TCCATGAAATCAGCTTAATATAATTTTGAAATTTTCTTTCTAGTGCATTGCCAAATAGAGATGAAATTCAAAGCATGAAGTCCTGAATAAATGGCCGATA TTATTCATTTCATGAAATTCTAACAATATCTTAAATATTGACAGCTGCTAAAAGTATATGTGCCAAAGTATGAGACTGGAGGAGGGTATTGGCCTACAGT ACACAACTCTACAATTTATTCATTGGTACTTATGCATGTAATAGCCATCGGCATTTTCGGGTTGAAGAAGCTTCCTCTTGCATCTGCATTGACTGTTCCT CTTCCAGTTCTCACACTTCTATTCAACGAGTACTGCCAGAAACGGTTCTTACCCTTATTCAAGGACTATCCTGCCGAGTGTTTGATTAAGAAAGACAGAA CAGATCAAAATGAGCAGAATATGCCAGAATTCTATGATAAGTTAGCCAATGCCTATAATGATCCTGCTCTGTTGCCAACAAAATATTCTGAAAGTTCTGA TAGTCATACCTCTCCACTACTTCATGGTTCTGCAACTTAAGTTCATAAACCGTATATTCCGATGGTGCCGCGTCGGTTGCAACTGTATAGCTGCACTCAC TTTGTAACTTCCTTTCAGGTTTGATTTGGTGGTCCTTGGTGTAACATGTCTGTTGTATTGTAAATTATTTGGATTAAGAATGTAAGGTTGTAACAAGTAT GGAGAAATTCAATTCTGGTATGGGTAATTAGTAATTACCATACATTTTTGGTTAGCATCATAGTGAAAAGAAAGACTATAGCTAGTTATAATTGTAACAG AGATTGGTTGGAGAAAAAAGGAGTTGTCTTTGTTAGTGCATGCATGCGGCTTGTGAGTTCCTCGAGTTCATCAAACAAATTGAGTACAAAGTAATGGATC AACTGAATAAAACTCCGGCAATGATATCTCTATTGTCCTTACTAAAATGAGCTATGAGGCTCATAGGAATGTGTTATTGAAAGTGTTGAATCAAGCCCAT ATCAAATTAGAAATCCAGCCAAAACTATACAGCAATAATATGGATCACCTGTCCCAAAATGATTGTCCTCGTATTCCTAGTCAATCAACTTTCTCC BLAST |
| Tissue | pods |
| Gene name | LI_gene_173859; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_531445
| Blastp | CSC1-like protein At1g69450 from Arabidopsis with 61.17% of identity |
|---|---|
| Blastx | CSC1-like protein HYP1 from Arabidopsis with 62.66% of identity |
| Eggnog | transmembrane protein 63C(COG5594) |
| Kegg | Link to kegg annotations (AT1G69450) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019452941.1) |
| Pfam | - |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |