| Id Trinity | TRINITY_DN50007_c0_g6_i1 |
|---|---|
| Name Transcript | Ll_transcript_533625 |
| Sequence | AAAACATTATCAAACCCTTCTCACTCTCTTCCTCTTCTTCTTTTCATAGCCTTATCTTAGATATGAACATGATGAGTGATGAAATTGATGTTCCACCCTT CTTTCTTTGCCCTATCTCATTAGAAATCATGAAGGACCCAGTTACTATCTCCACAGGCATCACTTATGACCGAGAGAGCATTGAGAAATGGCTTTTCACT GGAAAAAACAAGACATGTCCTGTGACAAAACAACCCTTCTCAGATTCCATTGATCTCACTCCAAACCACACACTTAGAAGACTTGTTCAAGCTTGGTGTA CTATGAATGCTTCTCATGGCATAGAAAGAATTCCAACTCCAAAACCTGCAGTCAACAAAATACAAATAACAAAGATCATCAAAGATGCTTATCATTCACC TCTTTTGTTAATCAAATCTCTGAGTAGACTCAAATCAATTTCTTCGGGTAGCGAAAGGAATAAACGTTGCATGGAAGCTGCAGGTGTTGTTGAGTTCTTA GCATCAGTTATAATAAGCAACATACACAACAATGATTCTGCTACAAGTGCTGAAGATGAAGCTTTAAGTATCCTTCATGATCTTCGTGCATCTGAAGCTG GTTTGAAGATTCTGCTAGGGTTCAAAAACGGTGAGTTTATTGAATCGTTAACAAGGGTGATGCAAAAGGGTATCTATGAATCACGAGTTTATGCATTGTT CTTGCTGAAATCGATGTCTGAAGTAGCTGAACCAGTGCACTTGTTCCATATAAGAACCGAGTTATTCACGGAGTTAGTACATGTCTTGAAAGATCAAATT TCACAGAAGGTTTCAAAGGCAACACTTCAGACACTGATACAACTGTGTCCTTGGGGTAGAAATAGGATCAAAGCTGTGGAATCAGGTGCTGTTTCTATCC TCATAGAGCTTCTTCTTGATTGCAAAGACAGAAAGCCTTGTGAAATGATGCTTGTGTTGTTGGAGTTTCTATGCCAATGTGCTGAGGGAAGAGCTGAACT TTTGAGCCATGGTGCTGGGCTAGCTATAGTGTCCAAAAAGATTCTTAGGGTTTCTACAATGGCAAATGATAGGGCTGTGAGGATTTTATTGTCTGTTTCT AAATTCTCTGCAACTCCAAGTGTTGTTCAAGAAATGTTGAAAGTAGGTGTTGTGGCTAAACTTTGTTTGATGCTTCAAGTGGATAGTGGAAACAAGGCCA AGGAGAAAGCAATGGAGATACTCAAACTTCATGCTAGAGTATGGAGGGATTCTCCTTGCATACCCAAGAATTTGATTTCTTCATATGCGAGTTTATGTTT GAATTAATGATTTATAATTTACAGGAACATTATTCTTTTCGACAAATTAACTTATTAGTGTATATTATTTGGAAATTACTGTTAGGAAATAGTATTTAGA TAGGGTATAACCATTGCCCAGAAGAAGGATCACATGTCCTAAAAAATTTTGTCCTCATATTTCAAGTCAATAATATTTCATCAAGTAATAAAAACTAAAT TATTTTATATTTCTATGATTTTTTTTCTTTTTAATTATGTGTCATTTTTAATTGAATTGATACATAAATAAGACACTAAAAATGAGACAACTTCTTCAAC TATTTATTTGGTGTATACACCAAACTAGACAATCTTATTGCCAACGATATAAATAAATAATTATTGTCTCATTTGTGTACCAATCCAATTAAAAAATGAC ACCTAATTAAAAAGAAAAAATCATAGAAACATAAAATATTTTTTATATTACTTATTAAAATGTGATTAGTCAGGAACGGATACATGAATTTTTTGAGATA CAAAACAAACAACAACATCTCTGTTGTCAATTTAGTTTTTTTTTTTAAATTTAAATTGAAAATTGGCATGTTGCCGATTTTGGAGAGAGATTTTTTTTTT TAATTCTCCAGTGGCATTGCAGATTTACACTAGGTGAGAGAGAAAAAATGATGAAACTTGGC BLAST |
| Tissue | pods |
| Gene name | LI_gene_173921; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_533625
| Blastp | E3 ubiquitin-protein ligase PUB23 from Arabidopsis with 58.46% of identity |
|---|---|
| Blastx | E3 ubiquitin-protein ligase PUB23 from Arabidopsis with 59.12% of identity |
| Eggnog | e3 ubiquitin-protein ligase(ENOG410YC1Z) |
| Kegg | Link to kegg annotations (AT2G35930) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019455484.1) |
| Pfam | U-box domain (PF04564.14) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |