| Id Trinity | TRINITY_DN50010_c3_g1_i2 |
|---|---|
| Name Transcript | Ll_transcript_532181 |
| Sequence | GAGAAGTTGATGAATGCGAGAGTTGTGTATTTAGGTGAAGCGGAACAGGTTCCGGTTCGTGATGATAAGGAATTGGAGCTTGAAATTGTGAAGAAGTTGC ATAAGATGTGTTTGGAGAATCATAAGCTTTTGTCTTTGGCACTTGAAACTTTTCCTTCTAATCTTCAACCACAGCTTAATCAGTATTTGGATAACAAGAT AGATGGAGAAACTTTGAAGTCATATACGTTGCATTGGCCACCTGAACGGTGGCAGGAGTATGAACCTATTCTTAATTACTGTCGTGAAAATGGAATTCGT CTTGTTGCTTGTGGCACCCCACTAGCGATCTTAAGGACTGTCCAAGCAGAAGGAATTAGTGGGCTTTCAAAGGCTGAGCGTAAAGCATATGCACCACCGG CTGGTTCAGGCTTCATATCAGGCTTTACTTCTATCACACGCAGATCAAAAGTTGATAGTACTCTAAATCCGTCTGTTTCTTTTGGTCCAAGCTCATATCT ATCTGCACAGGCTAGAGTAGTTGATGAGTATACTATGTCACAGATCATCTTGCACAACGTGCTTGAAGGGGGAGCCACTGGTATGTTAATAGTTGTGACT GGTGCAAGCCATGTTACATATGGATCTAGAGGAACTGGAGTCCCAGCAAGAATTTCAAGAAAAATTCAAAAGAAAAACCAAGTAGTCATACTACTTGACC CTGAACGACAATTCATTCGCAGAGAGGGAGAAGTTCCTGTTGCCGATTTTTTGTGGTATTCTGCTGCCAGACCCTGTAGTAGAAATTGTTTTGACCGTGC TGAGATTGCTCGTGTTATGAATGCTGCTGGGCGGAGGCGAGATGCCCTCCCACAGGATCTTCAAAAGGGAATTGATCTTGGTTTAGTATCACCAGAGGTA TTGCAGAACTTCTTTGATCTAGAGCAGTATCCTCTGATTTCAGAACTCACTCACCGATTCCAGGGTTTTAGGGAAAGATTGTTGGCAGATCCCAAATTCT TGCACAGATTAGCCATAGAAGAAGCTATATCAGTAACTACTACACTAATAGCACAATATGAAAAGCGGAAAGAAAACTTTTTCCAAGAGCTTGACTATGT TATTACAGACAGTGTCAGAGGATCCGTTGTTGATTTCTTTACAGTGTGGCTTCCTGCACCAACTTTGTCATTCCTTTCATATGCTGATGAGACGAATGCA CCTGAAAACATTGATGCTTTAATAGGTCTTCTTGGCTCCATCCCGGACAATGCTTTTCAAGAGAATCCAGTAGGAACTAACTGGAATCTAAATCATAGAG TTGCATCAGTTGTATTTGGTGGTTTAAAACTTGCTTCCGTTGGATTTATTTCAAGCATAGGAGCTGTTGCTTCATCAAATTCTCTGTTTGCAATTCGTAA CTTCTTTAATCCAGCAGTTGTCACTAATCAACAAGTTCTAAGGTCACCAATACTCAAAACAGCAGTTGTTTATGCATGCTTTCTTGGAGTGTCTGCAAAT CTCCGCTATCAGATAATTGCTGGGTTAGTGGAGCATCGGATTTCTGATCAGTTTGCATCCGAAACATTTCTTGTAAATATGCTATCATTTGTAACAAGGA CAATCAATTCGTATTGGGGAACCCAGCAATGGATTGACCTTGCCCGCTTTACCGGACTGCAAGTTAGAAAGACAGAGTTACCTGCACCAGAGTCTCTTAT TGCAGTGGCATGCAACAAAACAGAAGAGGCTAGCATTGATGAGATAAAAAATGAATGAAGTGAAAATACCATTGTCACATTTTCTAGGTAATTTATATTA TTCTTCAAAAGCTGGTACAATAAAAATAGGCACAAATGAATAGTTTTTTGTTTTCACCATAATCTCACCCTTCTCTCTCTAATGAGCCTACTTACATTTC CTTCCATGTTACAACAACAACCAAGCCTTAATCCCACTCGGTGGATTTAGCTGCATGGATCAAACGATACCATAATGTTCTATCATAAATCATGTTCATT GACAAAGCATTGATTTCAAAATCTTTCCTAATTGTTTCACTTAT BLAST |
| Tissue | pods |
| Gene name | LI_gene_173947; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_532181
| Blastp | Protein RETICULATA-RELATED 5, chloroplastic from Arabidopsis with 72.25% of identity |
|---|---|
| Blastx | Protein RETICULATA-RELATED 5, chloroplastic from Arabidopsis with 72.25% of identity |
| Eggnog | Domain of unknown function (DUF3411)(ENOG410YH33) |
| Kegg | Link to kegg annotations (AT2G40400) |
| CantataDB | Link to cantataDB annotations (CNT0000252) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019415198.1) |
| Pfam | Haem-binding uptake, Tiki superfamily, ChaN (PF04187.12) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |