Ll_transcript_532186

• Id Trinity: TRINITY_DN50010_c3_g1_i4
• Name Transcript: Ll_transcript_532186
• Sequence: GAGAAGTTGATGAATGCGAGAGTTGTGTATTTAGGTGAAGCGGAACAGGTTCCGGTTCGTGATGATAAGGAATTGGAGCTTGAAATTGTGAAGAAGTTGC ATAAGATGTGTTTGGAGAATCATAAGCTTTTGTCTTTGGCACTTGAAACTTTTCCTTCTAATCTTCAACCACAGCTTAATCAGTATTTGGATAACAAGAT AGATGGAGAAACTTTGAAGTCATATACGTTGCATTGGCCACCTGAACGGTGGCAGGAGTATGAACCTATTCTTAATTACTGTCGTGAAAATGGAATTCGT CTTGTTGCTTGTGGCACCCCACTAGCGATCTTAAGGACTGTCCAAGCAGAAGGAATTAGTGGGCTTTCAAAGGCTGAGCGTAAAGCATATGCACCACCGG CTGGTTCAGGCTTCATATCAGGCTTTACTTCTATCACACGCAGATCAAAAGTTGATAGTACTCTAAATCCGTCTGTTTCTTTTGGTCCAAGCTCATATCT ATCTGCACAGGCTAGAGTAGTTGATGAGTATACTATGTCACAGATCATCTTGCACAACGTGCTTGAAGGGGGAGCCACTGGTATGTTAATAGTTGTGACT GGTGCAAGCCATGTTACATATGGATCTAGAGGAACTGGAGTCCCAGCAAGAATTTCAAGAAAAATTCAAAAGAAAAACCAAGTAGTCATACTACTTGACC CTGAACGACAATTCATTCGCAGAGAGGGAGAAGTTCCTGTTGCCGATTTTTTGTGGTATTCTGCTGCCAGACCCTGTAGTAGAAATTGTTTTGACCGTGC TGAGATTGCTCGTGTTATGAATGCTGCTGGGCGGAGGCGAGATGCCCTCCCACAGGATCTTCAAAAGGGAATTGATCTTGGTTTAGTATCACCAGAGGTA TTGCAGAACTTCTTTGATCTAGAGCAGTATCCTCTGATTTCAGAACTCACTCACCGATTCCAGGGTTTTAGGGAAAGATTGTTGGCAGATCCCAAATTCT TGCACAGATTAGCCATAGAAGAAGCTATATCAGTAACTACTACACTAATAGCACAATATGAAAAGCGGAAAGAAAACTTTTTCCAAGAGCTTGACTATGT TATTACAGACAGTGTCAGAGGATCCGTTGTTGATTTCTTTACAGTGTGGCTTCCTGCACCAACTTTGTCATTCCTTTCATATGCTGATGAGACGAATGCA CCTGAAAACATTGATGCTTTAATAGGTCTTCTTGGCTCCATCCCGGACAATGCTTTTCAAGAGAATCCAGTAGGAACTAACTGGAATCTAAATCATAGAG TTGCATCAGTTGTATTTGGTGGTTTAAAACTTGCTTCCGTTGGATTTATTTCAAGCATAGGAGCTGTTGCTTCATCAAATTCTCTGTTTGCAATTCGTAA CTTCTTTAATCCAGCAGTTGTCACTAATCAACAAGTTCTAAGGTCACCAATACTCAAAACAGCAGTTGTTTATGCATGCTTTCTTGGAGTGTCTGCAAAT CTCCGCTATCAGATAATTGCTGGGTTAGTGGAGCATCGGATTTCTGATCAGTTTGCATCCGAAACATTTCTTGTAAATATGCTATCATTTGTAACAAGGA CAATCAATTCGTATTGGGGAACCCAGCAATGGATTGACCTTGCCCGCTTTACCGGACTGCAAGTTAGAAAGACAGAGTTACCTGCACCAGAGTCTCTTAT TGCAGTGGCATGCAACAAAACAGAAGAGGCTAGCATTGATGAGATAAAAAATGAATGAAGTGAAAATACCATTGTCACATTTTCTAGATGATATCAAAGG TGAATATACTATCAAGAGAAGATTGGAGATGCTATTTGGTCAGATTCAAACCTGGACCGGGTCAATGGCTGATCAAGGGTGAGGCTCTTTACAGGACTGA TGCCTCTCAGGTGGATAGATAGGAAGGTGAATATATCTTTTTGTTGCCAATTTTATACAAAAATAAATCATTTCAGATGTTATTTTTGATTTTATGTAAT TCATAATTATAAGTGACCACTATAGAATATCATATAGTGAACTGAGTTTTTTGATGGTATGAATTTATTGTTGTTAGCAATTTTCTATTTTTAAATGAAA ATCTATGATTTAATTTCTTGTTAAAAAAAGTTCAGTGGAGGGAAATTGGAGAAAGATGAGAATAAAAAATATTGAACTAATATAGACAGGGAAGTACATT TTCTCACATTGAAATAGCAATTGATGGTCTTGGTCCTGCATCAGTTGGAAAATTATGTACCGATTGATCTCTTTGATTTGTTATTGGAGTCACAGTGTGC TTAATAAGCCTCTTTCTTATTCTTTGTTGTTGCACCACCAACACTGATG
• Tissue: pods
• Gene name: LI_gene_173947;
• Additional information: details;

Expression of Ll_transcript_532186

FPKM

• PAB: 12.3
• PNAB: 2.6
• PS1: 3.8
• PS2: 8.8
• PS3: 6.3
• PW1: 8.7
• PW2: 13
• PW3: 16.9

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_532186

• Blastp: Protein RETICULATA-RELATED 5, chloroplastic from Arabidopsis with 72.25% of identity
• Blastx: Protein RETICULATA-RELATED 5, chloroplastic from Arabidopsis with 72.25% of identity
• Eggnog: Domain of unknown function (DUF3411)(ENOG410YH33)
• Kegg: Link to kegg annotations (AT2G40400)
• CantataDB: Link to cantataDB annotations (CNT0000252)
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019415198.1)
• Pfam: Haem-binding uptake, Tiki superfamily, ChaN (PF04187.12)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;