| Id Trinity | TRINITY_DN50011_c0_g2_i3 |
|---|---|
| Name Transcript | Ll_transcript_531770 |
| Sequence | AACAAATTTGTGAACCATATCTTTTTGAACATATAATTATTATTCCCAATATAATATTGTCAATATATATCAAATCATAGTCGATAAAATTTTATACTAC TAGACCAACTTCTCGATATTAATAAAATCGAATCCATTCATAAAAAAGCTAAAAGGTGTGCAACTCCTCCTATGTTGGGTTCTTTCTCTCTTCAAATCCC TAATAAATTCAGTCCAAATTCAAATTCACTGAAATTTCCATCTAAATGGAGGATTCCGATGGAGTCCTCAACTTCGATTTCGAGGGCACTCTCGACGCCG CTCCTCTCCCCTCCATCACCGCCACCGTCTCCGCCCCTTCCGGTCCTCTCATCCACCACGACGCCTCCTCTGTCGCTTCCTCCATTCCCAACGCCAACTC CCTCGCCATAACCCCTCACTCTGCCTCCGACCACGCCTCCGCCAATGTCCAAGGCCGGCGGAGCTTCCGGCAGACGGTGTGCCGGCATTGGCTTCGAAGC CTGTGCATGAAGGGAGACGCGTGCGGGTTCCTTCACCAGTATGATAAGGCGAGGATGCCGGTGTGCCGGTTTTTTCGGCTTTATGGAGAGTGCCGGGAGC AGGATTGTGTTTATAAACACACCAATGAAGATATCAAGGAGTGTAACATGTACAAGTTAGGATTTTGTCCCAATGGGCCTGATTGCCGATATAGACATGC AAAATCTGCTGGACCTCCACCTCCTGTTGAAGAGGTCCTTCAAAAGATCCAACATTTGTATTCTTACAATTATAATGGTTCTAACAAATTTTTCCAACAA AGGGGTGCTAGCTATAACCAACAAGTTGAACGATCTCAGTTTCCTCAAGGAGTTAATTCTACAAATCAAGGTGTGACTGCAAAACCCTTAGCAGCAGAGT CAGGTAATGCCCAGCAGCCGCAGCAAGTTCAACAATCGCAGCAGCAGGTCAGTCAGAGCCAAATACAAAGTCCCGCTAATGGTCAGCCCAATCAAGCCAA TAGAACAGCAATCCCTTTACCACAAGGAATATCTAGGTCTGTTCAGAGTCTTGTAGTTTTCAATTAGGCTGGGTGAAATCTGTCATTAGTATGCCCTTAC AGTTACTTAAATATATAAACGTGGTACATATAACATATAGAACATATTTTTATTTGGGAGATTATGCCAACATTTGCCTTGTGTAGTTAGTTTCTCCCAA GACTATTGCTATCGCTTGGCTGTATACACATATATTTGATGTTGGTTGTTATTGGCTGATCACACACATCAATGTTAGTTGATTTCTTGCATGTTCTTTA CCACTAATTGACTTTAAACTCAATTAGAACAACCTCTGGCTTCTAAGGTCTAATTCCTCTTGGAAATTTGATACCTTGACAAGCTAAGCATCAAGTTCTT AATTACTTACTGTTTAATAAAATTTACTGTCAGGATATTATTTGTAGTCCATAGTGTAAAAATGTAAAATAAAGTTTGACAATTATTGAAAGTGAGAAGG ACGTTTGTATCTCAAAAAGAAAAGGTTGACATGTTAAAGGTAAAACATGTCAGAGCAGCTTCATAACTTTAACAGTATAATTCTCGTTTAGGTTATTACC ATATGCTCTCTGTTCATTTCACTTGTTATCAAGTTATCTTCTATCACCGAGAGAAATATTGTTATAATATCAATCCCCTGTGCCTAGAATGTGAATTTGT ATTACCTGCTGTATGGTTCCTGTTACCGAACTAGAGATTACTACATTATCATGTACTGTTCCAGAAGCGAAAAAATAGATATTTTTATGAGGGGTCTGTC CTCAAATCTAGATTTTTTATCCTATA BLAST |
| Tissue | pods |
| Gene name | LI_gene_173959; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_531770
| Blastp | 30-kDa cleavage and polyadenylation specificity factor 30 from Arabidopsis with 60.22% of identity |
|---|---|
| Blastx | 30-kDa cleavage and polyadenylation specificity factor 30 from Arabidopsis with 58.8% of identity |
| Eggnog | zinc finger(COG5084) |
| Kegg | Link to kegg annotations (AT1G30460) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019440105.1) |
| Pfam | RNA-binding, Nab2-type zinc finger (PF14608.5) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |