Ll_transcript_533493

• Id Trinity: TRINITY_DN50018_c3_g1_i9
• Name Transcript: Ll_transcript_533493
• Sequence: GAAAGATCCCTGTCTGACCTGTATTTGAAACATTTCGGCGCTTCCAACAATGTCTGTCGAATTTAATCAATTTCCTAATATGCCCCCAACCATTCTCATT TTTATTCTAAATAAATAAAAACCTGATATGACAAACACTGATTGTGGTTGAAATTGTTATGATATAACTTTGGATCCTTTTTCTCTGTCACTCTTTCTGA AACTCTCAACCCTTCTATCTCAAGCCTTTACCTTTTTTCTATTTTTTTTTGTTGATAAGAAAAAAGTTGTCTTTTTTATCATTTTCACCGAACCCCATTT TGGGATTGTGTTGATTCTTTTGACACCCTTTGTGATTAGCGATTCGATCTTACAAGAAAACCCAGTTGCTGTTTTTGTTTCTTTGTTTTTTGGGACAAAC AACAATGAACTCTTCAACAAGGTTAGATTCAGCAGTGTTTCAGCTCACACCCACTAGAACCAGGTTTGACTTGGTTATAACTGTGAAAGGAAAGAAAGAG AAAATTGCCTCAGGCTTGCTCGACCCATTTCTATCACACCTAAATTTTGCTAAGGATCAGATGGCCAAGGGTGGTTATTCAATTGTTCTTGAGGTTGATG GTGGCAGTGATGCTTCATGGTTTTGCAAGGGAACGGTCGAAAGGTTTGTTCGCTTTGTGAACACTCCTGAGATATTGGAACGTGTATATACTATAGAATC TGAAATCTTACAAATTGAAGAAGCAATTGCAATTCAAGGAAATAATTCTATAGGAGTTAGCTCTTTGGAAGAAAACGACGTAAAACATGTGGAAAACACC GAAGGCACTCATGAAGGAACAAGCAGGAAGAGTGTGACTGATACCAACGAAGAGAAAGCAATTGTACTTTACAAGCCTAATGCAGAGCCACCAGAAGCAA ATGGAAGCACCACATCAGAAGGAAACTCAAAAGTCCATCTTCTGAAAGTCCTAGAGACACGTAAATCAGTGCTTCAGAAAGAGCAAGGCATGGCATTTGC ACGTGCTGTTGCTGCTGGTTTTGACATTGACCATATAACAGCTTTGATGTCATTTTCTGAATGCTTTGGCGCATCTCGATTGAGGGATGCATGCAAAAAG TTTAGGGATCTATGGAAAAGAAAACATGAAACTGGACAATGGCTTGAAATTGAAGCTGCTGATGTGATATCCAATAATGCATCTAGCTTTATACTTCCCA ATATGTCCCCTGCATCCCATCCTGAATACAACTCGGAGAGTAATGGGAAATCAAGTTCAGATGTGCCACCAATGAACCACCAACCATCTGCAGGCCACCA AGATAATATTCAAGGTCAATTTCCACATCATATGTACCCTCCTTGGCCTGTTCATTCTCCCCCGGGAACTATACCAGTATATCCGTCATATCCAGTGCAA GGCATACCCTACTATCAGAGTTATCCAGGAAGTGGTCCATTTATCCAGCCAAGTTATCCACCTATGGAGGACCCCAGACAAATTGCTGGTCAATATCTGG GGCACAGAAGACATTCTATGGATAGTAGACAGAACAATACTGAGTCAGAAACCTGGGATGTAGAAGCTTCAAAATCAAGGTCGCAGGATGAAGTGGATAT GGAGAGGGAAGGTTCACAGACTGGAAGTCGACGGAAGAAGGCTAGCCGATCAGGGAGGCAGAGTTCTGGCAAGGTGGTCATACGGAACATCAATTACATA ACAAAGACAGAAAACACTTCTGGCAGTGGATCATATTCAGATTCTGCCTCAGAAACTGATGAAGTTAAAGATAACCAGGAATCAGTGAGGTCCTCAAAAA GAAGCGAGCCCAGAAAAGAATCTTCGAATGATAAGGAAGAAATAGACCATGGGAAGGATGCAGAAGGAGGGCACTGGGAAGCATTCCAAAACTGTTTACT GAGAGATGTTGATGAAGATAGGCATGCCAATGACCAAGACCATTTTGATGTGGGAAAGGTGGATCACATGAAAAGAAAAAAACAAGTTGCAGGCAATGAT CCTTTGGTTCTTAGTGAGCGGGATATGCATGAAGTTCAAGGCAGTGGTACTACGGATATGCTTAGCATTGGCAAAGGACCGTCTCGCGTGCTTAAGGCAT CCAATAATGATTTATTGCTATCTGTAAGGGAAGGACACTCTGGAGATGGTAGGTCAGTAGATGATGTACAATCTCTAGAAGCAAACAGAAGACGGGGTGG TTATAGAGGAGCTGCCAATGATGATTTCATCACCCCTAAACAACAAAGTCAGTTTGGTAATTCATATCCTTCATCGGATATGGAAACTGTCAGCGGACTA GGTTATTCAAACAATAAGTTGGAAAGGAAGTTGTTTCATGATATGGATGACGACTCCTACATAGTGGATTATAGATCAAGCCAAGTCAGTGATGCAGGAA ATGTTGAGAGAAAGGCTATTGACATGGACTCTGAGTTCCCAATGGTGAATCAAAAGGAAGAAAAATCTTATAATGAGAAAAACCATACGAATTATCATCA AGATGAATTGAGTATGATGCCTGAAAGGGGAGCTGAATGGGGTTCAATGAGTTATGACCCTGCTTTAGACTACCAAATGCAGGCCCAGGCTGGTACTCCA GAAGATAAGAACAAAGAGGTATTGGCTGACACCAAACCAGGATCTAAGAAGATGGACAAGGAGCCGAAATCGAAAATTACTCCAAACAGTTCTGATAAAA GAAAGTCCATTGGGCCAATAAGGAGAGGGAAAACTTCTAAACCAAGTCCTTTGGATGAAGCACGGGCACGTGCTGATAAATTAAGAAACTACAAAGCTGA TCTTCAGAAAATGAAGAAAGAGAAGGAAGAGGAAGCGATAAAGCGCATAGAAGCTTTAAAGATGGAGAGGCAAAAGAGGATTGCTGCCAAGAGTGGCACA ATCACTGCACACTCACCAGCGCCGTCACAGCTAGCAAAGAAACAACTTCCAACAAAACTTTCTCCAAGCTCTTATAAAGGATCAAAATTTAGTGATTCAG AGCCAGGACCATCTTCACCCCTTCAAAGATTTTCTATTAAAACTGCTTCTGTTGGATCTAATGATTCTTCAAAAATGTCGAAAACCAGCAGATTGAATAC TGGAAGCCACTTGACTGAAAACAAATTAAGCCGTTCAGTATCTTCTTTGCCCGAGTCTAAGCAAGAGAAAGTTGTTGGTTCAACTGATATTAAGGCATCA ATGGCACGGATTAGAAGATTGTCAGAGCCTAAAATGAGTACCATTCGTCAGACTCCCTCAGTTAAACCATATAGCGCTAGAACAATTTCAAAGACTAAAT CAGCTGATGGACCCGGGATCAAAAAGATTTCTGCTATTGTGAATTATGATAAGAGCAAGACAGCAGCCCTCCCAGAACTGAAAATCAAAAGTTCTAAAGC AAGTGACAGTGTCCTAGCTAAATCACCAGTCAAAGAGACGACACAGAAGCTGAAAGGTAACAAGTCTAGTACGACACAGAAATTGAATGGTAACAAGTCT AGTATGAATTCAGAAGGTACCATGCCGAAGAAAAGTGAAATGAAATCTTCATCCAATGATGATGGAGATGACAATCCTGTTGTTGACAAGACTGTCGTGA TGCTTGAGCGTGAGAAACCTCATGCTCCTGCCATTCTTAACTCTGAAGAAAAAGTCAGGATACCAAAGAAACGTGATAGTGATATAGTGGTGGAGAAAAC TGACACAGCATCAAATTATGTTCCTATTCGTGCACCTGTTTCGCCACTAAACATGGATATAATAAATAAAGTAACAGAGAACCAACCACACCTGCAGCTC GTATCTAATATGGTCAAAATTCATAATACAGAGAAAGAACCTTCAAAATCATCCAGCATTTCAATTGCCGAGGAAACATACCATCCCCCATATGCTCGAG TTTCTTCTTTGGAAGATCCTAGCACAAGAAATACCGAGTATGGTAAAGCATTCCCCACAAATTTAGACAATGCAGAAATTGGCATGGAGACTGTTAAAGC ACATGTGTCTGACATCAGGAACTCAACACTTGAGAAGATTCCTGAAGCAATTGATAAGCCTCAGATAAAGGAAACATCGAAAGGGTTCAGAAGACTGCTA AAGTTCGGGAAAAAGAGCAGCTTGGCCACTGCTGGACACAGTATGGAATCAGATAATGTCAGTATTGATGGTTCTGACGCAGATGAGATTGGAACTAACA GTTCCTCTAGTGAAGTTCATACTTTGAAGAATTTGATCTCTCAAGATGAAACCCCCACTGCCAGCACAACTCAACAAAAATCTTCCCGCGCTTTCTCGTT GTTATCACCATTTCGAAGCAAGAAGTGAAGAAGAGATAATGATGGATTGATAGAGTGGATGGTGTTCTTGGTTAAGGTTGATGCAGTGACTAGCTATGCT AGACATTTATTTGATTTGTCTCATTTCCCACCTAGTGTCATTAGTTACTATTGTCCTGCTGGGAAAGATCAGCGAGTAATGTATTGCTACAAATATTGAT CTTTCTATATTAATGTTTGGTTGTTCATATGCAGAAGTAATTTGTAAATTGTACTCTTTCCTGGTTTTGATTAAACATTATCTCTGGATTAAGGGGGTGT TTCTATTCTCACCTTCATTGGAACTTGTCTTTTTATAAGAAAATAGAAGCTAATACCTATCATGCTAGTACTATGAAAATAGAAGAAAAACAAATCGCAA GTGC
• Tissue: pods
• Gene name: LI_gene_174014;
• Additional information: details;

Expression of Ll_transcript_533493

FPKM

• PAB: 3.3
• PNAB: 16.3
• PS1: 21.7
• PS2: 10.7
• PS3: 18.9
• PW1: 12.9
• PW2: 11.1
• PW3: 12.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_533493

• Blastp: COP1-interacting protein 7 from Arabidopsis with 30.36% of identity
• Blastx: COP1-interacting protein 7 from Arabidopsis with 29.3% of identity
• Eggnog: NA(ENOG4111427)
• Kegg: Link to kegg annotations (AT4G27430)
• CantataDB: Link to cantataDB annotations (CNT0000925)
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019427873.1)
• Pfam: -
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;