| Id Trinity | TRINITY_DN50018_c4_g1_i13 |
|---|---|
| Name Transcript | Ll_transcript_533511 |
| Sequence | CAAAATTGTACTAGTAATCCAGAACCGGGTGAGGCAGTCACCGGTTTCTCCCCCAACACCACAGTGCCACGACAACATACATCAAATCAATAACACACCC TAACACTCGCATTCACCTTCTTCATTCTACTTTTCGATTATTGTTTCGTTGCTGAGAGATTTAAATTTGAAAGAAAATAAAATGTTTTTGTTTGATTGGT TTTATGGCATTCTATCATCGCTTGGGCTATGGCAGAAGGAGGCTAAGATCCTTTTCTTAGGTCTCGATAATGCCGGAAAAACCACCTTGCTCCATATGCT TAAAGATGAGGTCACTTTCTATTTTTCTTTTTATTTCTAATCTCTGTTTTTCTTTTCCGATTATTTATTTATGTTTATTCCTCTAAAGGGTTAAATTCTT CTGAATCTTTGTCTCTCTCTACAGCGCTATGTGATTTGCTATAAATTCTAACTTTCTATTTTAATGGAGATCTTTTTTGCTTAGTTACTATTTATAAAGG ATTCTACTTTACCATTTCTGTAAAGAATTAGTCATGGATGATATGTTTGAATTTTCCACCATTCACAGTAACATGGTCTTTTGGTTGTGTTGGCTCTGTA ACAGGAGTAATTTTACCTTGTATTCAGTGTTTTGGATGATATTTTTGGTGTGGTTAAAATCATTTAGTTCAACTTATCCTTCATGGGTTATTTAAACATG GGATTTTTCTATTCCCGAGGGCTACACTTGTTGGGAGAGGCTGCCATACCCCCGAAAAGGATTAGCTTCCTTACTCATAGGGCAAGGGGATACCTTTCGT TATACAAAAAAAACATGAGATTAGTGTTTCAACATTGGGTACAAGGCTATATATATTGACTTGTCTGGATAAATCTCCTTCTCTAGGAAGAGTTTATGTG TAAAGTGAGAAAGTGATGGTGGTTACATTATTAGTGAGTTAAAGATTTTAATGCAATTTAGATTAAATCAATGGTGAATCTGAATTCCTCATTAATTGCT TAATAACTTAATTTATACAGAACTTCATTTTATGGAAGCCTTTTCCAACAATCCAACCCATTTTGGTCTAATTGTTGTGAGAAAAGCACAGGCATCAACA GATATAAATAAATGTGATGTCAAATAATGTTTGTGTGATGTTTTTATTATGGGAATTGGCTTGGCAGAGATTAGTCCAGCATCAGCCAACACAGTATCCT ACTTCAGAGGAGTTGAGTATTGGGAAGATCAAGTTTAAAGCATTTGATCTCGGGGGTCACCAGATTGCTCGCAGAGTCTGGAAAGATTACTATGCCAAGG TTTCTCTCTTTCTCCAAAATACACTCACACTCGAGCACACACTTTTGTTTGCATATTTGCAAATTCTACCCCAAGGCCAAGGGGAGATATTTTAATCATG CATTTTCAAAACTATATGATTGGATACCACTTGAGCGTATGGATATTTTAGGAATTTAAGATAAATTATTTTTCCAATCTAATGTAGTTTTGTCTACATG CTAATGTGTTGGTCATTTAGAAGCGTCAAATATAAAGCTGTTCAGGATAATGCAAACTGGCAGTCCTAGCTGTTTGCTAGGGTAAGTATTTGCTATGCCC ATTACTGGAATTGCTCCAAAAGATGAAGTTGTGAATAAAAAAGAATTTTTTGTTGTGGCATATTCTAAATTATTGCGTCTTATTAAATTATACAACTCGA GGTATTTAAATGATCGATGCCTTCATAATCCCAGCTAATCATTCAAAGTTTATCTGATTCATGGGAGGCAGAAATTATTCATGGTAATCACTGATAGTGC CTTTTCTCTTTACAGAGTTGCTAATAGTATATTATCACTTATCAGACATCGGTAGTTTTTCCAATATGCTTAAATCAAGGGATGCTCATGCCTTCATGAT CCTAGCTAGCTATTTCATCTTTATCTGATTCATGGAAGCAGAAATCATTTTGGGAGTTCATTGTTGCTACCTTTTCTCTCTCTTTAGAAGGGCTACTAAT AGTATTTCTGGAAAAAAATGATTCTCTGAACATATCTATCTGCATGTTCAACTCTTATATACAGATTTTGATTATTTGAAACATTAATGCATTGTTAGAA ATTAATTTCTTTTTTGTTTAAAATTGTTATTTGTATTTCTATTCTCAATCATTAAGCTTTTCTTGGATTTGGTACAGAAAGTTATGTTCTATTTTTGGTG TGCTTTATAAATAGATAACAAAACATGACATGAGATTAAGAAGGTGAACATTTTGGTTTCATTGAAAGGAGTGGAGCCATAGATAATATAATGATGTTTT GTTTGTGCACCTAACACTATCTGAGAGCTTGCTTGAAAGTTCTGAGCTAGGAACTTCTCTTACTTGAGATTTATTATTTTCTCTCTCTTTTATACATTTT TATGACCTTGACTAAGCTTCATCTTTCTTTGATCTAGGTTGATGCCGTGGTCTACTTGGTTGATGCTTATGATAAGGAAAGATTTGCAGAGTCTAAAAAA G BLAST |
| Tissue | pods |
| Gene name | LI_gene_174016; |
| Additional information | - |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_533511
| Blastp | - |
|---|---|
| Blastx | GTP-binding protein SAR1A from Arabidopsis with 78.69% of identity |
| Eggnog | Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. SAR1 controls the coat assembly in a stepwise manner. Activated SAR1-GTP binds to membranes first and recruits the SEC23 24 complex. These SEC23 24-SAR1 prebudding intermediates are then collected by the SEC13 31 complex as subunits polymerize to form coated transport vesicles. Conversion to SAR1-GDP triggers coat release and recycles COPII subunits (By similarity)(ENOG410YIKI) |
| Kegg | Link to kegg annotations (AT4G02080) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_020240438.1) |
| Pfam | - |
| Rfam | snoR83 (RF01227) |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |