Ll_transcript_533519

• Id Trinity: TRINITY_DN50018_c4_g1_i20
• Name Transcript: Ll_transcript_533519
• Sequence: CAAAATTGTACTAGTAATCCAGAACCGGGTGAGGCAGTCACCGGTTTCTCCCCCAACACCACAGTGCCACGACAACATACATCAAATCAATAACACACCC TAACACTCGCATTCACCTTCTTCATTCTACTTTTCGATTATTGTTTCGTTGCTGAGAGATTTAAATTTGAAAGAAAATAAAATGTTTTTGTTTGATTGGT TTTATGGCATTCTATCATCGCTTGGGCTATGGCAGAAGGAGGCTAAGATCCTTTTCTTAGGTCTCGATAATGCCGGAAAAACCACCTTGCTCCATATGCT TAAAGATGAGAGATTAGTCCAGCATCAGCCAACACAGTATCCTACTTCAGAGGAGTTGAGTATTGGGAAGATCAAGTTTAAAGCATTTGATCTCGGGGGT CACCAGATTGCTCGCAGAGTCTGGAAAGATTACTATGCCAAGGTTTCTCTCTTTCTCCAAAATACACTCACACTCGAGCACACACTTTTGTTTGCATATT TGCAAATTCTACCCCAAGGCCAAGGGGAGATATTTTAATCATGCATTTTCAAAACTATATGATTGGATACCACTTGAGCGTATGGATATTTTAGGAATTT AAGATAAATTATTTTTCCAATCTAATGTAGTTTTGTCTACATGCTAATGTGTTGGTCATTTAGAAGCGTCAAATATAAAGCTGTTCAGGATAATGCAAAC TGGCAGTCCTAGCTGTTTGCTAGGGTAAGTATTTGCTATGCCCATTACTGGAATTGCTCCAAAAGATGAAGTTGTGAATAAAAAAGAATTTTTTGTTGTG GCATATTCTAAATTATTGCGTCTTATTAAATTATACAACTCGAGGTATTTAAATGATCGATGCCTTCATAATCCCAGCTAATCATTCAAAGTTTATCTGA TTCATGGGAGGCAGAAATTATTCATGGTAATCACTGATAGTGCCTTTTCTCTTTACAGAGTTGCTAATAGTATATTATCACTTATCAGACATCGGTAGTT TTTCCAATATGCTTAAATCAAGGGATGCTCATGCCTTCATGATCCTAGCTAGCTATTTCATCTTTATCTGATTCATGGAAGCAGAAATCATTTTGGGAGT TCATTGTTGCTACCTTTTCTCTCTCTTTAGAAGGGCTACTAATAGTATTTCTGGAAAAAAATGATTCTCTGAACATATCTATCTGCATGTTCAACTCTTA TATACAGATTTTGATTATTTGAAACATTAATGCATTGTTAGAAATTAATTTCTTTTTTGTTTAAAATTGTTATTTGTATTTCTATTCTCAATCATTAAGC TTTTCTTGGATTTGGTACAGAAAGTTATGTTCTATTTTTGGTGTGCTTTATAAATAGATAACAAAACATGACATGAGATTAAGAAGGTGAACATTTTGGT TTCATTGAAAGGAGTGGAGCCATAGATAATATAATGATGTTTTGTTTGTGCACCTAACACTATCTGAGAGCTTGCTTGAAAGTTCTGAGCTAGGAACTTC TCTTACTTGAGATTTATTATTTTCTCTCTCTTTTATACATTTTTATGACCTTGACTAAGCTTCATCTTTCTTTGATCTAGGTTGATGCCGTGGTCTACTT GGTTGATGCTTATGATAAGGAAAGATTTGCAGAGTCTAAAAAAG
• Tissue: pods
• Gene name: LI_gene_174016;
• Additional information: details;

Expression of Ll_transcript_533519

FPKM

• PAB: 0.6
• PNAB: 0.8
• PS1: 0.4
• PS2: 1
• PS3: 0.8
• PW1: 0
• PW2: 0.3
• PW3: 0.9

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_533519

• Blastp: GTP-binding protein SAR1B from Brassica with 96.63% of identity
• Blastx: GTP-binding protein SAR1B from Brassica with 97.73% of identity
• Eggnog: Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. SAR1 controls the coat assembly in a stepwise manner. Activated SAR1-GTP binds to membranes first and recruits the SEC23 24 complex. These SEC23 24-SAR1 prebudding intermediates are then collected by the SEC13 31 complex as subunits polymerize to form coated transport vesicles. Conversion to SAR1-GDP triggers coat release and recycles COPII subunits (By similarity)(ENOG410YIKI)
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019441202.1)
• Pfam: ADP-ribosylation factor family (PF00025.20)
• Rfam: snoR83 (RF01227)
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;