Ll_transcript_533394

• Id Trinity: TRINITY_DN50036_c3_g1_i11
• Name Transcript: Ll_transcript_533394
• Sequence: GTCGCAGAGTAAAGCCTCCAACTTTGTGATCCTTTCTCAGTTACCCACCTTACCCAAAACCTTCAAGGTAATAAAGTTCACTTTTTTATTAAAATTTTTA TGTACTTTTACCCAATTCATAGTTTTTGTGAGTATTCTAGTTGTACCATAATAGAGTTTTGTTTTTTTGTATAATCCAAAGCATTGCCTCCACTGAATGA TGTTATGGCACAGAATTTGAATATACTGAGAAGGGTTTTGGCCTATAGAATCTTGAACCATTTCTATGCTAACCATTTATCATGTCCTGCAAGATATTTT GCTCATGCTTCTTATTCAACCACTGATTTTAGAGTTCAATCTGAGGGTAGTTGTAACATTAGAAATATCAATGATAAAAATGATGGTTTTAGGAAAGTGG GTTCTGGGTTTCAAGGGGATTTAAGTTTTGGTGCAAGTATCAATTATGATGTAGAAGATGAGGGTGATGGTGATGAAGTTGGTGAAGAAGAGGGTTCTAG TGATGATGAAAGTATTGAGCTTATCGGTTCCTTTCGTGGAAATCACAAACAGAGAGAAAATATTGCAAGAGTTGAGATTGATGAAAATGAATTTAGACAC CCTTTGGTGAAGGAGGTTTGTAGGTTAATAACTCTCAGGTCTGCTTGGAACCCTAATCTTGAAGGACAATTGAGGCATGTATTAAGAAGCCTCAAGCCCC CACATGTTTGCGCCATTTTGCGCTCACAAGTTGATGAACGGGTTGCTTTGAATTTTTTCTATTGGGCTGATCGGCAGTGGCGCTACAAACACAACACTAT TGTTTACTATACACTGTTAGATGTCCTAAGCAAGACTAAACTGTGCCAGGGTGCTAGGCGGATTCTTCGCCTTATGACCCGCCGGGGAATTGAATGCCCA CCTGAAGTTTTTGGCTATGTAATGGTATCTTATAGTCGTGCAGGGAAGTTGAGGAATGCCTTGAGAATTTTGACCTTGATGCAGAAAGCTGGAGTTGAAC CTAATTTATCTATATGTAATACTGCCATCTATGTGTTGGTGAAGGGAAATAAATTGGAAAAGGCTCTGAGATTCTTGGAACGAATGCAGATTACTGGAAT CGAACCTGACATTGTAACTTATAATTGTTTGATCAAGGGTTACTGTGATTTACATCGGAGTGAAGATGGATTGAAGCTTATTGCAGAAATGCCGTCTAAG GGTTGCCTTCCTGATAAAGTAAGTTATTATACCGTGATGGTTTACTTCTGTAAGGATAAAAAAATTGAAGAGGTGAAGCAGTTAATGAAAAGCATGGTTT CGGATAGTACATTAATACCAGATCAGGTTACGTATAATACACTTATCCACACGCTTTCAAAGCATGGGCATGCTGATGATGCTCTTAATTTCTTGAGGGA AGCAGAAGACAAAGGTTTCCACATCGATAAGGTTGGGTACAGTGCAATAGTTCACTCCTTCTGTAAGGAGGGGAGGATGGACGAGGCAAAGAGTTTAGTG AACAATATGTACTCAAGGGGTTGTATTCCTGATGTGGTGACATATACTGCTATTATCAACGGATTTTGTCGCACGAGGAAGATAGATGAAGCGAAAAGGA TGCTGCAGCAGATGTATAAACATGGGTGCAAGCCAAATACTGTTTCTTATACAGCTTTGTTGAATGGCCTCTGTCACAATGGAAAATCATTAGAGGCAAG GGAAATGATAAAGGTAAGTGAGGAGCATTGGTGGACCCCAAATGCTATCACATATAGTGCTGTGATGCATGGGCTCCGTAGGGAGGGAAGATTGTTCGAA GCCTGTGAATTGATTAGGGAAATGGTTGAAAAGGGTTTTTTTCCAACACCAGTTGAAATTAACCAGCTAATACAGTCTTTCTGTCGAAATAAGGAAGTGG TAGAAGCTAAATTATTTTTACAAGAATGTCTGAATAAGGGCTGTGCCGTCAATGTTGTAAACTTTACTACTGTAATTCATGGTTTTTGTCAGACTGATGA CTTGGAAGCTGCTCTATCGATGCTAGATGACATGTATTTAAGCAATAAACATCCTGATGCAGTCACGTACACAGCACTGGTTGATGCATTGGGGAAGAAA GGTAGATTGGACATGGCTTCTGAGTTGATCATCAAGATGCTCAGCAAAGGTTTGGATCCTACTCCTGTAACATACCGGACAGTCATACACCGTTATTGTC AATGGGGTAGAGTGGGTGAGATGTTGAAATTATTGGAAAAAATGCTTGTTAGGCAGCCGTTTGGAACAGTATACAATCAGGTTATCGAGAAACTTTGTGC TTTTGGAAACCTTGAAGAGGCCGACAAGCTTCTAGGTGAGGTTTTGAGAACAGCATCGAAAGTTGATGCTAATACATGCCATGTTCTGATGGAAAGCTAT CTGACTAAAGGGGTCGCTCTGTCAGCATATAAAGTGGCGTGTCGGATGTTCAGCCGGAATTTGATTCCAGATTTAAAGCTCTGTGAGAAAGTGAGCAAGA AACTGATGTTAGAAGGGAAGTTGGTGGAGGCAGATAACCTTATGATACGACTTGTTGAACGCGGAATACAACAAAATGAGATACATAGCGAAGTTAGCCG CTATTCTAAGCTTAAAAGTTAAAGAATGGTCATGCTTATCATTTTCCTATGTTGGCAATCCATCTTCAGCTCTAAAAAGAGCTATAAATGTAGGGATAAG CCTTTATCAATTTCAAGTTCATTTCCAGATTTCTCTCTTTTATGGTTACAATGATATGCATAGCATTTTCCCATCATCTATTAAGAAATGTAATGTGAAA AGGAATTTAGGACTAGGATTGTCATTTTATATTGTTTAGATGAATTGATATTTGATAAAAGAGACAAAATGAATGCATTGTTTAAAGAAGTACATCAATC AGATGTTATGATAATTGTGATAATTGTAACCAATTACATCACAATTAGATTGATGTTATACATTGCTTCAAGCATTGCAATGTCCATCAAGTTAGTTGTA AGCAGATACATCTTTTTTAAATAAACAATGGTGCTATCAGTTTCAGATGCAATGAGCTCTGTTACAATGACATTAAAACAACTCAAATTATTGCAGTTAC AACGATTACTTCCGAAGGAATATGCTCCGAAGAATGGTATCAGTGCTAGCAAATTCCTATGACAAAAGTGCTAAGCTATTGAATAGAACTCATAAGCCTT ATGCTCACTCTCCAATGGAGGTATATCTCTCTATTCACATGTCTTATTTGTTTTGTAAATACCATAATCAACAAGAACAAAAGCTTTATTTAGTTCTACT AGTGCAGGCTAAAATTGTTTCCAGCTACAAGCCAAAGATTAATACGACATTATCAATATCAGAGCGAAAACTAACAGAATGAACTTAAATGCTTTCATTT TTTTATTCGAGGCAAATGATGATGCAAGTATGTCTGATAGACATTTGGGTGCAAGAGGATCATCCGGAGCCAACC
• Tissue: pods
• Gene name: LI_gene_174186;
• Additional information: details;

Expression of Ll_transcript_533394

FPKM

• PAB: 0
• PNAB: 0.6
• PS1: 0
• PS2: 0.9
• PS3: 1.7
• PW1: 0.6
• PW2: 0.8
• PW3: 0.1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_533394

• Blastp: Pentatricopeptide repeat-containing protein At5g39710 from Arabidopsis with 28.74% of identity
• Blastx: Pentatricopeptide repeat-containing protein At5g39710 from Arabidopsis with 29.13% of identity
• Eggnog: Pentatricopeptide repeat-containing protein(ENOG410Z7Z7)
• Kegg: Link to kegg annotations (AT5G39710)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019439669.1)
• Pfam: PPR repeat (PF01535.19)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;