| Id Trinity | TRINITY_DN50074_c1_g1_i3 |
|---|---|
| Name Transcript | Ll_transcript_532721 |
| Sequence | CTAATTTTCATTTTTCTCTTACAATACAAATTATATACCTTCTCCTTTTCTCCCCTTCACTCTCAAGTTGTAACCCTTTTTTTCAGACTTTTCCATGGAA TCTGAATTAGATCATGGATAAAAATGTCAACTTTTCATGATTTTTGTTCAAATCAATAAGTTCTCTGCATTTTTAGGCTCAACAGGTTAATGGGTTTTTC GTCCTTATTTTGGTAACAAATAGTATGGTATAGTTGTTTCCTTTAACTGTCTCTGTGTGTAGTTGATTTTAGTCTTCACTTTTTTGTTGTTCCTGAATGC TGTATTAGGAAAAAGGGTGTATGTAGCTTAGTTTTTGAAAGGGGTTAGTGATGGTGATGTTAGGGAATGACCCAGTTGAGTCTTTTTTCAATTCCATCAA TGGTATCAAAGAAGCTTTTTTACCATTGGAAGTGGGTATTAGGAAAGCAAAAAATGATTTTGAGCATTGCTGGTTAGGGACTATTAGGAATAAGGAAAAT GGGGTTCAGTTGATTGCACATGAGATTTGTGGTGTGAAGAATCAGAAGAAGAGTGGTGAGTGTGTGGTTGTTGGTGATAAGAGGAATAAAGGGTTGTCAG AGAAGGTAAATTTGAAGTCTTTTTTGGGTGTGTTTTCACAGAATGTAGAAAGTGGGAATAGTGGTGATGTGTTGAATGAGAAGGAGGAGGTGGTTATTGC TAAGGACGATGAATCATGTGTTAACTGCTTGAAGTTTTCGATAACTTGGTCTTTGATGGTTAATGGATTTCTTCAGGGCATGGCAGATCCTGTCAAACCT GGGAGAAAGAGGTTTCAGAAAATTGGTGATGAAGATAAGTTGTGTTCATGCATGAAGTCGAATGTTTCATGTGAAGTGAAGCAAAATGGATCTAAGGCTC AGTTTATTAGAACTATCGGGGACACGGGTGTGATGGAGAAGGAAGGAAAGCATGCTTCACTTGAGTGCCTTATAGGTTTTATCTTTGATCAATTTCCTCA GACTCCTCGGAGTCTTGATCAGGGAGTTCAAGAAAATGGCAATGACTTTGGGAAAAAATCTCAGGGGTCGCATCATTTTTTGTCTCATTTTAGTGACATG AATCGACTTAAACATATTTTGGAAGGACACAAAGTATATGTGGATAGGTTCTTAGGGAATTTGAGGTTTGCAAAGATGGGTGGTGTGCCATCAAATGTGA TTGAAATAAGTCCTTCAACAAGCGAAGGGGGAGATAGTAGTGCTACTGTTGTAAACAGGAAAGACACCGGGGAAAGTTTCCCTCAGAAGTTTGCCACCAG CATACTCAGCGTTACGCTGTCCAACATGGCGCGTATAAGATCAAATCTTTCCACAGTTTCATTGACAGAGTTGGTTGAGATGATACCACAGCTGGGGCAA GTATCTACCGAGCATCCTGACAAGAAGAAACTATTCTCTGTACAAGATTTCTTCCGATACACAGAAACTGAAGGTAGGAGGTTCTTTGAGGAGCTCGATA GAGATGGTGATGGCCAAGTTACTCTAGAAGATCTAGAAATTGCAATGACAAATAGAAAGCTGCCACGAAAATACGCTCATGAATTTATGAGACATACTAG AAGTCACTTATTTGCAAAGTCTTTTGGTTTGAAACGATTCTTATCATTAATAGAACATAAGGAGCCAACAATTCTTCGCACATATACTTCACTATGTCTA AGCAAGTCTGGGATGCTGGAGAAGAGTGAAATATTGGAATCACTACAGAATGCAAGACTTCCTGCAAATGAAGATGATGCAGTTGCTATGATGCAATTTC TGAATGCAAATACTGAAGAATCTATTTCTTATGGACATTTCCGCAATTTCATGCTTCTGCTTCCCTCTGACCGTCTTCAAGAGGATCCTAGGAGTATTTG GTTTGAAGCTGCAACTGTAGTTGCTGTTCCACCACCAGTTGAATTTCCTGTAGGAAGTGTTCTAAGATCTGCTTTGGCAAGTGGCTTTTCTTGTGCCCTT TCTTGTGCATTAATGCATCCAGTTGATACCGTCAAGACCCAAGTACAAGCATCAACCTTATCCTTCCCTGAAATCGTTTCGAAGCTTCCACAGATCGGGG CACGGGGTTTATACAGGGGATCAATCCCTGCAATTCTTGGACAGTTTACAAGCCATGGCTTGAGAACTGGGATATTTGAAGCTAGTAAAATGGCGTTGAT AAATATTGCTCCAACACTACCACAAATGCAGCATTTATGTAGGTACACTCTATGTTATCATTCTGTAGCACAATTTTGGGAACAGTATTGCGTATTCCCT CAGAGGTGTTAAAGCAGCGGCTGCAGGCAGGTCTTTATGAAAATGTGGGTGAGGCTTTAGTTGGGACTTGGCGCCATGATGGACTTAAGGGTTTCTTTCG TGGAACTGGAGCTACCCTTTGTCGAGAGGTTCCATTTTATGTTGCTGGTATGGGTCTGTACGATGAATCTAAAAAGGCGGTCTCAAAACTACTACGGCGG GAACTTGAGCCCTGGGAGATGGTTGTTGTCGGAGCAATAACTGGTGGCTTGGCTTCTGTCACGACAACACCTTTCGATGTCGTGAAAACTAGAATGATGA CTTCACAGGGTCAGTCTGTGTCAATGTCGATGGTAGCCTTCTCTATACTTCGCCAAGAGGGACCCCTCGGCTTATTTAAAGGTGCAGTTCCCAGGTTCTT TTGGATTGCTCCTCTGGGTGCAATGAACTTTGCAGGCTATGAGCTAGCGAGGAAGGCCTTGAATAAATATGCGGAGCTGGCAGAGAATAAATCGTCTCAG AAAAAAGCAGAGAAGGTGGCCAGTTCAGAGTAATGTATTATCTGAAATTACGCTACATCCCCTTGTATGTTAGCCTGTACAGAAACCAAATGCCAGATGG ATTTTGAGCACTTTTCGGAGTTCATTGCTGTTCATGTCTGGATTCCCAATCCGCCAACATGATATGCATTTCGTTTCCTTGTTCAGATTTCATTGCTGGT CATGTCTGGATTCTCAATCTGCCGATATCGCACTGCATCACACATCTTATTTCCTTGTTCATGTTGTAGCTTTAGTCTGCCAATTGTTGCAGCTGATTCA AATTATGTCATTTTGTGCTTTAATTATGGACTGTCTTTGGGAGAGTGCAATTGATGTCTTTATAGAATGTACAGATTTTCATATTTTGCAACTTTCATCT TTTTGGTACATTCATCTTCCATCAATTTTTAATTGGTTTGGACACTACTCATCCATTTGGTTTCTTTCATCACCAAGTTGCTTTTTGACTTCTGACTAGT TTCATTCAAACCTAGCAAATAATTTTAATTTCTTATAACTTTTAACCCATCAGTGTTAAGAGTGTATTGTAATTCAAAGCATTGTAGTATAGGAGAATTG TATTGGGCCTCGTGTGAGTCCATTGAGTTTGTAACTTGTTTGTAACTAATCTTTGCTATTAATAGAAACAAGTAGTTGGGTTGATAGTTGTAAACAACCT ACACTTTCTAAAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_174504; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_532721
| Blastp | Calcium-binding mitochondrial carrier protein SCaMC-1 from Oryctolagus with 22.92% of identity |
|---|---|
| Blastx | Putative mitochondrial carrier protein PET8 from Saccharomyces with 35% of identity |
| Eggnog | Solute carrier family 25 (Mitochondrial carrier(ENOG410XQ4P) |
| Kegg | Link to kegg annotations (100009567) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019461504.1) |
| Pfam | EF hand (PF13202.5) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |