| Id Trinity | TRINITY_DN50105_c5_g1_i3 |
|---|---|
| Name Transcript | Ll_transcript_280295 |
| Sequence | CTTATCTATCTATCTATCCCCTTTCTCTCTCTTTCTGTTTCTGTTTCTGCTTCTTCAAATGACCATGACCATGGCTACTATTACTACTACTATTACTTCT TCATCGTCATCCCTGATGTTCACCCATCTTCAACATTCATCTCTCCTTCTCAATTCCATGCATCTCAATTTCCGCAGGGGACCCAGCAGGCCTTTCCAGC CCCTCGTGGCTGCTCTGGAAGTTGCTGAAGCTGTTGAACAGGATGTTGAAGAGGAAAGCATTATGATGAAGCCCAAGAAAGGGAAGGCCGCATTGGCTCT CAAGAGGGATAGGCTGAGGTCTAAGAGGTTCCTTGAAATTCAGAATTTGAGGGAGCATAACAAAGAATATGACTTGAACACAGCAATAGGTTTGCTTAAA GAAACAGCCAAAACCAAGTTTGTAGAAACTGTAGAAGCCCATTTCCGCCTCAACATTGACCCTAAGTACAATGACCAACAGTTAAGGGCAACCGTGAGTC TGCCAAAGGGAACTGGAAAGCCTGTTAAAGTGGCTGTTCTTACCCAAGGTGAAAGATTCGATGAAGCAAAAAATGCGGGAGCTGATTTGGTCGGTGGAGA GGACCTCATAGAACAGATTAAAGGAGGTTTCATGGAATTTGATAAATTAATTGCTTCTCCAGATATGATGCCTAAGGTTGCTAGCCTTGGAAAGATTCTG GGGCCAAGAGGACTGATGCCAAATCCAAAAGCTGGCACTGTCACACCTAATATTCCTCAGGCTATAGCAGAATTCAAACAGGGAAAAGTTGAATTCCGGG CAGACAAAACCGGAATTGTGCACTTACCTTTTGGAAAAGCTGATTTTCCAGAAGAGGATCTTCTTGTCAACTTGGTTGCTGCAATAGTATGTTGTTCTCT AACCTTGTTTTGTAACTCTATTTGTAACTGTATTCCAGAAAATGATAAAGTAAAGCTTTCAACTCATTATCCTAATTCGACAGAGATCAGTAGAGGCAAA CAAACCGTCAGGAGCAAAAGGTGTGTACTGGAAAAGTGCACACGTATGCTCGGCAATGGGGCCTTCGATTCGGTTAAATATCAGGGAGATGCTTGATTAC AAGCTTCCATCAGAATAGAGCACACCTACCTACCTACCTTTAAATGCAATGCTTGTTTTATGGTGCCATTTTCAGTCAAAGATGTTACCTACCTACCTTC AAATGCAATGCTTGTTTTGTGGGTGCCACTTTCAGTCAAAGATGTTACCAAAGTTCCATACAGGGATGGATTGATTTGGTGGGTGGTTAGAATAACTTGT ATCTTTGTTAAGAATATGCACACTACATTACATAGTCTTTGACCCCAGGCCCAGGATTTTATTTACCTTCTATTCACTCTGTAACTAACACCACTCATTT AATTATATTTTCTTTCTTGCT BLAST |
| Tissue | pods |
| Gene name | LI_gene_174732; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_280295
| Blastp | 50S ribosomal protein L1, chloroplastic from Arabidopsis with 74.27% of identity |
|---|---|
| Blastx | 50S ribosomal protein L1, chloroplastic from Arabidopsis with 82.8% of identity |
| Eggnog | Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release (By similarity)(COG0081) |
| Kegg | Link to kegg annotations (AT3G63490) |
| CantataDB | Link to cantataDB annotations (CNT0000332) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019454375.1) |
| Pfam | Ribosomal protein L1p/L10e family (PF00687.20) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |