Ll_transcript_280299

• Id Trinity: TRINITY_DN50105_c5_g1_i7
• Name Transcript: Ll_transcript_280299
• Sequence: CTTATCTATCTATCTATCCCCTTTCTCTCTCTTTCTGTTTCTGTTTCTGCTTCTTCAAATGACCATGACCATGGCTACTATTACTACTACTATTACTTCT TCATCGTCATCCCTGATGTTCACCCATCTTCAACATTCATCTCTCCTTCTCAATTCCATGCATCTCAATTTCCGCAGGGGACCCAGCAGGCCTTTCCAGC CCCTCGTGGCTGCTCTGGAAGTTGCTGAAGCTGTTGAACAGGATGTTGAAGAGGAAAGCATTATGATGAAGCCCAAGAAAGGGAAGGCCGCATTGGCTCT CAAGAGGGATAGGCTGAGGTCTAAGAGGTTCCTTGAAATTCAGAATTTGAGGGAGCATAACAAAGAATATGACTTGAACACAGCAATAGGTTTGCTTAAA GAAACAGCCAAAACCAAGTTTGTAGAAACTGTAGAAGCCCATTTCCGCCTCAACATTGACCCTAAGTACAATGACCAACAGTTAAGGGCAACCGTGAGTC TGCCAAAGGGAACTGGAAAGCCTGTTAAAGTGGCTGTTCTTACCCAAGGTGAAAGATTCGATGAAGCAAAAAATGCGGGAGCTGATTTGGTCGGTGGAGA GGACCTCATAGAACAGATTAAAGGAGGTTTCATGGAATTTGATAAATTAATTGCTTCTCCAGATATGATGCCTAAGGTTGCTAGCCTTGGAAAGATTCTG GGGCCAAGAGGACTGATGCCAAATCCAAAAGCTGGCACTGTCACACCTAATATTCCTCAGGCTATAGCAGAATTCAAACAGGGAAAAGTTGAATTCCGGG CAGACAAAACCGGAATTGTGCACTTACCTTTTGGAAAAGCTGATTTTCCAGAAGAGGATCTTCTTGTCAACTTGGTTGCTGCAATAAGATCAGTAGAGGC AAACAAACCGTCAGGAGCAAAAGGTGTGTACTGGAAAAGTGCACACGTATGCTCGGCAATGGGGCCTTCGATTCGGTTAAATATCAGGGAGATGCTTGAT TACAAGCTTCCATCAGAATAGAGCACACCTACCTACCTACCTTTAAATGCAATGCTTGTTTTATGGTGCCATTTTCAGTCAAAGATGTTACCTACCTACC TTCAAATGCAATGCTTGTTTTGTGGGTGCCACTTTCAGTCAAAGATGTTACCAAAGTTCCATACAGGGATGGATTGATTTGGTGGGTGGTTAGAATAACT TGTATCTTTGTTAAGAATATGCACACTACATTACATAGTCTTTGACCCCAGGCCCAGGATTTTATTTACCTTCTATTCACTCTGTAACTAACACCACTCA TTTAATTATATTTTCTTTCTTGCT
• Tissue: pods
• Gene name: LI_gene_174732;
• Additional information: details;

Expression of Ll_transcript_280299

FPKM

• PAB: 20
• PNAB: 97.1
• PS1: 52.6
• PS2: 41.8
• PS3: 37.2
• PW1: 82
• PW2: 42.5
• PW3: 29.1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_280299

• Blastp: 50S ribosomal protein L1, chloroplastic from Arabidopsis with 74.65% of identity
• Blastx: 50S ribosomal protein L1, chloroplastic from Arabidopsis with 81.66% of identity
• Eggnog: Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release (By similarity)(COG0081)
• Kegg: Link to kegg annotations (AT3G63490)
• CantataDB: Link to cantataDB annotations (CNT0000332)
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019454375.1)
• Pfam: Ribosomal protein L1p/L10e family (PF00687.20)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;