| Id Trinity | TRINITY_DN50108_c2_g1_i8 |
|---|---|
| Name Transcript | Ll_transcript_280808 |
| Sequence | GAGAGAAAGAAAGTGAGAGGGGTATAAATGTGAGATTTCGTTGTTGGTGAGCTTATATAAAGGAAGATAGTATATATGTTACAGTTCCCCACTATTAAAG ATAGCTCTCTAAGGGAAGGGTGGTGCAAGGGAAGAGAAGAAGAGATCAGAAATAATTGACTGTGAAGATTTGATAATGGAAGAACATCTCACTCCATTGG CTGTTACCCATCTTCTTCAACATACTCTCAGAAGCTTGTGCATCCATGAAAATTCTCAATGGGTCTATGCTGTCTTTTGGAGGATCTTGCCTAGAAACTA CCCACCACCCAAGTGGGAAGGTCAAGGGGCTTATGATAGATCAAGAGGAAACAGAAGGAATTGGATATTGGTGTGGGAAGATGGTTTCTGCAACTTTACA GCCTCAGCAGTAGCACCTGAAATTAACAATACTGGTGATTGTCCTACATCATCAGTTTATGGGAACTGTGACCAATTCCAACCCTACCAAGGGCTGCAAC CAGAGCTCTTCTTCAAGATGTCACATGAGATCTATAACTATGGAGAAGGGTTGATAGGAAAAGTGGCTGCGGATCACAGTCACAAGTGGATATGCAAAGA ACCTAATGATCAAGAAATTAACTTCTTATCAGCATGGCACAATTCAGCAGACTCGCACCCTAGGACTTGGGAAGCGCAGTTCCAGTCTGGTATAAAGACC ATAGCCCTTATTGCTGTAAGAGAGGGTGTTGTTCAGTTAGGAGCAGTTCACAAGGTTCTCTCTCTCTCCTCCCCTCTCTCTTAAGCACTTTAGCCAAAGT CTATCAAACTAATTAATACACATTTTTATGATTTGTTCAGGATGAAAAAAGTAATTAAGTTTGTAAGTGTAAAATTAATTCTTGTAAGAAAAAATCTATT TGGCAAAAGCCTTTTACTGTTAACTACACACAATACACATTCATAAGCATATATTTTTTCAGGGTGAAAATTTAATGCAAGAATAATTATATTCACTCAT ATCATATCTGTCAACTTTGTTTTGTCTATGACTATGGCACTCAAGGTGATTGAAGACCTGAGCTATGTGGTGCTATTGAGAAAAAAGTTCAGTTACATTG AAAGCATCCCAGGTGTGCTTTTACCACACCCATCATCATCTGCATACCCCTATAAAGTGGAAGGATACACTGTTCCAGAACAGTGGCATTTCCAAGGAAG CGTTGCAGCAGCACCAGTTGAACTATATGACCACTTCAACATGCAGCCATTGAAGATAACTCCCTCCATGAGCAGCCTTGAGGCACTACTCTCTAAGCTC CCTTCAGTCATGCCGCCCCCGCAATTAACACAGCCACAGTCACATGTTTTGCCACAATCTCAAAGGCCATTGGAATTCATGGGAATGGAAAAAGTGGCAA AGGAAGAGTTAGATGAGGAGGGATATAGGCCTGAGATGGATATGGGAGAGAGTAGCAGTTCCATGCCAGGTTATCATCATCAACATCATTTCCACCAGTA ACAAGATCAGCAATGGATATTGACTATTAGGCTGATCTGAAACATGATGGAAATTAAGTCCTGACATTGTAGTAATATTACTTTCAGTATTGTTTGTAAT ATGATAATAACTACAGGGTTTTCATCTTAGGTTAATATTTTTATCCTTTTAATTCTAGATGCTTCTGATTCATGCTAGTATATTTTTTTACTACTGAAGG AAGCTTCAGTTTTCCATATTTCATGCATGGTTGTCATATCTGCATATGCTCATGATGTGACAGTCGTTAATCGCATATAATCGAACACTGAATATTTTCA AACCCAGCGATTGAGGCTG BLAST |
| Tissue | pods |
| Gene name | LI_gene_174744; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_280808
| Blastp | Protein RICE SALT SENSITIVE 3 from Oryza sativa with 38.98% of identity |
|---|---|
| Blastx | Protein RICE SALT SENSITIVE 3 from Oryza sativa with 33.19% of identity |
| Eggnog | NA(ENOG410YAU9) |
| Kegg | Link to kegg annotations (4350435) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019445476.1) |
| Pfam | bHLH-MYC and R2R3-MYB transcription factors N-terminal (PF14215.5) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |