Ll_transcript_279433

• Id Trinity: TRINITY_DN50111_c0_g2_i3
• Name Transcript: Ll_transcript_279433
• Sequence: CAAACATAACGTGACGTCGTCCCTTGTTTGTCCTGAATAGAAATTGTCCTCACCGAATATAGCTCCATTATTTCTTTCTTCTCTCGCTTTTCAGTTTCTG CTCAATCGCAGATGCTAGAATCAGAGCTTCAAGATTTATCTGACGACGCCGATTACGCTGCGTCTCAGCAACAGGGGTCTGCGAGCATGATGGTGAGTAG CGACAGTAATAAACAGGGTTCGTCCAGTGAGCTTGAAGGTGCTGAAATTATATTTTTGAAGGATAATGTTGCAATTCATCCCACTCAGTTTGCCTCTGAA AGAATCAGTGGGAGATTGAAGTTGATTAAGCAAAGCTCTTCCTTGTTTATGACTTGGATACCTTACAAAGCGCATAGCTCTGATGCAAGACTCTCTGACC AGGATAGAAACCTTTACGCCATAAGGGCAGTGCCTTTTACCGATATCAGGTCCGTCCGTAGGCATACTCCAGCACTTGGGTGGCAATATATCATTGTTGT TCTGTCTTCAGGACTTGCTTATCCCCCACTTTACTTCTATAGTGGAGGAGTCAAAGAATTCCTTGCTACAATAAAGCAACATGTTCTTCTTGTGAGATCT GCAGACGATGCAAATGTATTCCTTGTGAATGATTTTCAGAGTACCCTGCAGAGAACATTGTCTTCTTTGGAGCTTCCCAGGGCTGTTAGTATTGCATGTG GACCTTCAAACTTGTCAGGCGACGAATCCACTATGAATGAGAACCAAGAGAGGGCTGATGGTGGTGTCAGTAGTGGAAGTGTCAGTGCTCCCCAGTTTCA TGGGAGGCCAAGACATAAAGTTCATGATCCTACTCGGGACCTTTCTATTCAAGTTTTAGAGAAGTTCTCTCTTGTGACAAAATTTGCCCGTGAAACAACT TCACAACTCTTTGGAGAAAACCAGAGTAATGGATTTAGTTTCAGTGAGAGGAGAACCCATATCCAAACTAACCTTGATCACCCTAAGAGTCCTTCCAAGG TTGCTGAAAACGCTCCTGATGAAAATCCTGTTGTTGCAGATCCTCTAGAGGTGGCTTCTCTCATTCCCTTCTACAGCATACAATATTCAATTATTAATGA TATCCTCTTCCATTTCGCTTCTCGCAGTTTGATAAGTTATCGCTTGTGTGGGGAAAACCGCGTCAACCCCCTTTAGATTCTAAAGAGGTATGAGCTTTAT GTTTCCTGTAAGATATGATTTCTTACACAGGCCCATAATACCAGATTATAAGCATGCATATCTCTTGGAAATGCTCACTTGCCGTGATGATCATCCATAT TGTAGTGCAAGTATTTCTTATAATTGCTTGCACATGACATAACCTACAGGGTTTTATTCTCCTGGGGGTCATTTTAGACCAAAAGTTAGATGGACAGCAT GATGGCTTCATTTTAATTGTTCCCCTGGAAGTTCTAATTGCTTTCTTTGTTTTGACTCTCTCTGTCCACACGTTTATCTAACTATATTTCCTTTGTGATA GGCCACAGAACATGCCCCATTCAGCATGGTTTGGGCTAAATTAGTTCCTCAATGTTTATTTATCTACACTGATTCAATCAGCTCTATATAAACCAACCAT CGTTTAAAATATCCTATTGTTTTCATTATCACAAGTGACATATCTGCGGCAAAGAAAAATAATTTCATTTTACATTGTCTTATGGTAATAATTATGGTGC TGTGTGCTTACTAGCAAAGTAGTTAAATTTGCATCCACAATTTAAGTTCTCAGAGATGCCAGTGAGCCTCGATCATGCCAGAATGGCAATCTTGTTTCTG ACATGGGATTCATGGGCAAGCTCATTGGATTGTGAAATTGAACAATCTCTACGAGCAGGAATGGTTGTGGTGTAACGCACATGATGCTACCTTGAAATGA AATATTTTCAAGCTACAATCATTTGACTGCAGTGTGCTTCTTATGGCTATGCTGATTAATGTGTATTTTAGGGATGCCATTAAGTTATACATTAAGAAGA TCCTGAAAGTTTTAAGATGTTTGCTGGATTGCTTATTGGTGTAAAATATCTGCAGTGGATTACCTTCTTGGATTCTGAAGGGCGAGTCACTGATTCAGAA TCTTTGAGAAAGAGAATATTTTATGGTGGACTTGACCACGATTTACGAAATGAGGTATGGGGTTTGCTTTTGGGATACTATTCATATGAATCTACATATG CTGAGAGAGAATTTCTAAAGTCAGTTAAGAAGTCAGAATATGAGACCATAAAGAACCAGTGGCAGAGTATCTCCTTGCCACAGGCTAAAAGATTCACAAA ATTCAGGGAAAGGAAAGGCCTTATTGAGAAAGATGTGGTTCGGACTGATAGATCACTCACTTTCTATGAAGGGGATGATAATCCTAATGTAAATGTTCTG CGAGATATCCTATTGACATATTCATTCTACAACTTTGATCTTGGTTATTGTCAGGGAATGAGTGATCTTCTGTC
• Tissue: pods
• Gene name: LI_gene_174758;
• Additional information: details;

Expression of Ll_transcript_279433

FPKM

• PAB: 0.1
• PNAB: 0
• PS1: 0.2
• PS2: 0.2
• PS3: 0.5
• PW1: 0.2
• PW2: 0
• PW3: 0.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_279433

• Blastp: TBC1 domain family member 17 from Homo with 32.84% of identity
• Blastx: TBC1 domain family member 15 from Mus with 52.08% of identity
• Eggnog: TBC1 domain family member(COG5210)
• Kegg: Link to kegg annotations (79735)
• CantataDB: Link to cantataDB annotations (CNT0000874)
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019464371.1)
• Pfam: Domain of unknown function (DUF3548) (PF12068.7)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;