| Id Trinity | TRINITY_DN50113_c3_g1_i4 |
|---|---|
| Name Transcript | Ll_transcript_279800 |
| Sequence | CACTATACCAATATGGATATAAATATTTCATCATCACTCAATCTACTGTGTGAGGGGTTGAGCTAATTCATGAACAAATGGACTCTACTTACGTGGCAGC TTGTTTCTAGTTGCAGTAAAAGTTCAAAACCTCACCTCAATTCAATTGGGTAAGTATTAACTACATTTCCAACTTTCAAAGATTCTGCAGAATCCACAAA ATCTCGCTACTTCAAAAGATAGGGAAAAAACATGAAACTGTAGAAAAAACAGTTTAAGAAAACATGAAAGGGTTAGTTCCTTATACACCATTGATTTCAA GGGGTAAGCCTCCTATGTTGGCAAGGGTGGGAATATTACCATGCTGCCCTTATTTCTCCAGAGCCACCCTTTTATCCAAATTAAGATGCAGAGCGAAGTC AAGGTTGAACTTTGCCCATGGCACTTTCCGAGCCCAAGCATCCGATGTTTGCTTTGGACCTGCAGATGATAGAAGCAATAATGCAAAAGATAACCAGAAT GTCTTTGAAGGAAGTTCTATCAATGACGGTTCATCTAAAATTGCAAAACCTCTGAATAGGATCCCTTATCCTATCTCCATAGCTCTTGTGTTTTCACTGA TAGCCTTTTTGAAAGGGGGACCGTCATCAGTTTTAGCAGCAATTTCAAAATCAGGATTCACTGCTGCATTTACATTAATATTTGTTTCTGAGATTGGAGA CAAGACATTCTTTATTGCTGCACTTTTGGCAATGCAATATAAGAAGGATTGGTCCTATTGGGGTCAATGGGTGCTCTTGCACTAATGACAGTCCTATCTG TTGTTATTGGCCGAATCTTTCAATCCGTGCCAGCTCAGTTCCAGACAACCTTGCCAATTGGAGAATATGCAGCAATAACTCTTCTCTTGTTTTTCGGCTT AAAGTCACTAAAAGACGCATGGGATCTTCCATCAGATGTGGTTAAGAATGGTAATGACAGCAACCTTGAACTTGATGAACTTGTTGAAGCAGAGGAGCTT GTGAAAGAAAAGGCGTCGAAACAGCTTACAAATCCGCTTGAGATTATTTGGAAATCTTTCAGCCTTATATTTTTCGCTGAATGGGGAGACCGGTCAATGC TTGCGACAATTGCACTCGGGGCTGCTCAGTCTCCTTGGGGTGTGGCAAGTGGAGCCATTGCTGGACACTTTCTTGCAACATGTATTGCCATTGTTGGAGG AGCACTCCTTGCTAACTACATTTCTGAAAAACTGGTTGGCTACTTGGGTGGAGGGCTATTTCTAATATTTGCGGTTGCCACCTTGTTTGGAGTTTTCTGA TCTATTGCTGCATAGCCCTACTCCGTTTTAAATTCGATAGAATATTACTGAAGGAAGGACACATTTCGAAATAAAGAACGAATGTGCAGAGAACTGGGGA AACTTCATAGTTCAACTAAGTTGAAGATTTCTTTGAGTAGATATAAGAGGCAAATTGCTGACATTCATAGAGAATAAGAAACAATATTAGGGAGTAGAGA TATGGTAGTATAATGATAAAGTTGTGTATGTACCAAAAAGTAATAATGAGAAACTTGTGTGATTCTTTTTTCTTGAGATAAATGTACCCTGAAGATGTTG TCTGCTAAAAAAGCATCTAGCTTTATTAGAAATGCAAGCTTGTTCTGGTCAGAGATTATTGTTATGTTAGGGAACTCATTATGTTATTCTGATTTTGCAA GATTCATACATGCTTGGATAGTACTATTCTGCACAGTATTCATTAACTGGTCATTTTCTAGTGCTAAGTTTCACTTGCAAATATCTCAGTTTCATTTCAC TTGAGTTCCTTATTTCTTTGATCCC BLAST |
| Tissue | pods |
| Gene name | LI_gene_174777; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_279800
| Blastp | Protein PAM71-homolog, chloroplastic from Arabidopsis with 80.79% of identity |
|---|---|
| Blastx | Protein PAM71-homolog, chloroplastic from Arabidopsis with 81.42% of identity |
| Eggnog | transmembrane protein 165(COG2119) |
| Kegg | Link to kegg annotations (AT4G13590) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019413170.1) |
| Pfam | Uncharacterized protein family UPF0016 (PF01169.18) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |