| Id Trinity | TRINITY_DN50120_c0_g1_i5 |
|---|---|
| Name Transcript | Ll_transcript_280597 |
| Sequence | GGAGAAATAAATACAGAAAGAAAGAAAGGAAAACAATTTATGAAATATAATAATAATAAATTCCCCAAAAGTGGAAAACATGTTTTGGAAGAAACTTTTT GTTTGTTATCAAAAAGGCACAGCCGAAAGTGTTGTAATGCTCTTTTGCTAATATGCGCCTTTGAGTCTTCGATCGCATCTTCATTCAATTTTTCCTTTTC TCTCTTTCGATCCCCATTTTTTCCATTGCCCATTTTCAATTTCACGTTCTTAATGGCGAGTAGTGATAGTAGTTGTTCGACCCAGCTTCTTGATGGGGAT GGCATATTCAATGTTGCCGGAATTGAAACTTTTATGAAAGAAGTGAAGTTGGCTGAATGTGGGCTTTCGTATGCGGTAGTTTCTATTATGGGTCCACAAA GTAGTGGCAAGAGCACACTATTAAATAATTTATTCGGTACCAACTTCAGAGAGATGGATGCTTTTAAGGGAAGGTCTCAAACAACCAAAGGAATCTGGAT GGCTAGATGTGCTGGCATCGAGCCTTGTACACTGGTGATGGATTTGGAGGGTACAGATGGAAGAGAACGTGGAGAGGATGATACTGCATTCGAAAAGCAG AGTGCTTTATTTGCTCTTGCCGTCTCAGATATAGTGCTAATAAACATGTGGTGCCATGACATTGGCCGTGAGCAAGCTGCAAATAAGCCGCTTTTGAAAA CTGTCTTTCAGGTTATGATGAGATTGTTTAGTCCGCGGAAAACAACATTGTTGTTTGTCATACGTGATAAAACAAGGACACCACTTGAAAATTTAGAACC TGTTTTGCGAGAAGATATTCAGAAGATATGGGACTCTGTTCCTAAACCACAGGCTCACATGGAAACCCCACTTAGTGAATTTTTCAATGTTGAAGTTGTC GCTCTTTCTAGTTATGAAGAAAAAGAAGAACAATTTAAAGAACAGGTGGCCAACTTGAGGCAACGATTCTATCATTCCATTGCTCCTGGTGGGCTCGCTG GGGATCGGCGTGGAGTAGTTCCTGCTTCTGGCTTTTCGTTTAGTTCTCAGGAGATATGGAGAGTCATCAAGGAGAACAAAGACCTCGACCTTCCTGCACA TAAGGTTATGGTTGCTACTGTACGATGTGAAGAAATTGCCAATGAAAAATATGCTGCTTTTGCTGCAAATGAGGAGTGGTGTCAATTGGAAGAAGCTGTG CAATCTGGCGAAATTACGGGATTTGGGAAAAAGCTCAATTCACTACTTGATGTGTATTTGTCAGAGTATGATGCTGAAGCGATTTATTTTGATGAAGGTG TGAGATCTGCAAAACAAAAGCAACTTCAAGAAAAATTGTTGCAACTTGTTCAACCTGCATTCCAATCTGCATTGGCACATGTAAGATCTGGAACCTTGGA TAAATTCAAGGAGACATTTGACAAGGCTTTAGAAAGAGGGGATGGATTTTCTGAAGCTGCTAATAATTGCAACGGGTCTTGTATGGCTGAATTTGATAAA GCATGTGCAGATGTTGTTGTTGAACAAGCAAACTGGGATACATCTAAAGTAAGGGAGAAACTGCAGCGTGATATTGATGCACATGTTGCATCTGTACGTG CAGCTAAGATTTCGGAACTTACTTCATCATATGAGGAAAAACTGAAAGAGTCCTTGTCTGGACCTGTTGAAGCTCTTTTGGATGGAGCTAATAGTGATAC TTGGCCATCAATAAGGAAGCTTCTTAGGCGTGAGACTGAATCAGCTGTTTTGGGGTTCTCTAGTGCACTTTCCGGGTTTGATATGAACGAAGACACAAGA CAGAAAATGATTTTGAGTTTAGAAGATTATGCAAGGGGTGTGGTCGAAGGAAAGGCTAAGGAAGAAGCTGGAAGAGTTCTAATCCGTATGAAAGACAGGT TTACAATGTTGTTTAGCCATGACTCTGATTCAATGCCTCGTGTTTGGACGGGGAAAGAAGATATTCGTGCCATCACCAAGACTGCTCGCTCAGATTCTTT GAAGTTGCTATCTGTTATGGCTGTGATTCGTTTGGCCGACGGTGATACTGATAATATTGAGAAAACATTAGCAGTTGCATTGGTTGATTCATCAAGCAGT GCTGCTATTAAGAGCATCACAATGGTTGACCCACTAGCTTCTAGCACCTGGGAACAGGTTCCATCCTCTAATACATTGATCACACCTGTCCAGTGCAAAT CTTTGTGGAGACAATTCAAGAGTGAGACAGAGTACACTGTCTCACAGGCCATTTCTGCACAGGAGGCCAACAAGCGTAGTAACAACTGGTTGCCTCCCCC ATGGGCAATACTTGCTTTGGTTATTCTCGGATTTAATG BLAST |
| Tissue | pods |
| Gene name | LI_gene_174808; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_280597
| Blastp | Protein ROOT HAIR DEFECTIVE 3 homolog 1 from Arabidopsis with 77.78% of identity |
|---|---|
| Blastx | Protein ROOT HAIR DEFECTIVE 3 from Arabidopsis with 78.18% of identity |
| Eggnog | GTPase activity(ENOG410XPVJ) |
| Kegg | Link to kegg annotations (AT1G72960) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019456495.1) |
| Pfam | Root hair defective 3 GTP-binding protein (RHD3) (PF05879.11) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |