| Id Trinity | TRINITY_DN50127_c0_g2_i2 |
|---|---|
| Name Transcript | Ll_transcript_280684 |
| Sequence | CTCTAACCTTCTCATCCTTCTAGGGTACTCACAATAACAACTGCGCCAGCTTTCTCTTCTCAGGTGAGTCCGTTTGGTGAATCGTTGTTATGTCTCAGTT CCTTAAGCCGGAGAATGCTCTCAAAAGGGCAGAAGAGTTGATAAACGTTGGGCAGAAGCAAGATGCTTTGCAGACACTTCACGACCTCATTACTTCGAAA AGGTACCGAGCATGGCAGAAGACACTCGAAAAGATCATGCTCAAGTACATTGACCTATGTGTGGAAATGCGCAAAGGTAGGTATGCTAAGGATGGTCTTA TTCAGTATAGAATCATATGTCAGCAAGTCAATGTCGGTTCGTTGGAGGAGGTGATCAAGCATTTCATTCACCTCTCCACTGAGAAAGCTGAACATGCCCG GAGCCACGCAGAGGAGTTGGAAGCAGCTCTCGATGTTGATGATTTAGAGGCTGATAAAAAGCCTGAGGATTTGATGCTCAGTTATGTCAGTGGAGAAAAA GGAAAGGAGAGATCCGACCGGGAGCTTGTTACCCCGTGGTTTAAATTTCTTTGGGAAACATACAGGACCGTGCTTGAAATTTTACGAAACAACTCGAAAC TGGAAGCCCTATATGCTATGACAGCTCATCGAGCTTTCCAGTTTTGTAAGCAATATAAGCGAACAACTGAGTTCCGCAGACTCTGTGAAATCATAAGAAA CCACTTGGCCAATCTTAATAAGTACCGTGACCAACGAGACCGGCCTGATCTTTCTGCTCCTGAAAGCTTGCAACTGTATCTTGATACAAGATTTGAGCAG CTGAAAATTGCAACTGAACTTGGACTCTGGCAGGAAGCTTTTCGATCAGTTGAAGATATACATGGACTGATGTGCTTGGTCAAGAAAACTCCGAAGGCAT CCTTGTTGGTTGTTTACTATGCTAAGCTGACCGAAATATTTTGGATATCTTCAAGTCATCTATATCATGCATATGCGTGGTTCAGGCTCTTTGTATTACA AAAAAGCTTCAATAAGAATCTGAGTCAGAAGGATTTGCAATTGATAGCTTCATCCGTTGTTCTGGCTGCACTTTCAGTTCCTCCTCATGATCACACTCAT GGTGCATCCCATCTTGAACTGGAGCATGAAAAGGAGAGAAATTTGAGGATGGCTAACCTCATTGGCTTTAATCTTGAAACTAAACCTGAAGGCAGAGAAG TGCTTTCCAGGTCATCACTTCTCGTCGACCTGGTATCCAAGGGTGTGATGTCATATGTAACTCAGGAAGTGAAGGACATTTACCATCTTCTGGAACATGA ATTTCTTCCTTCGGATCTTGCGTTAAAAGTGCAGCCATTGTTAACCAAAATCTCAAAGTTAGGGGGTAAGCTTTCTACTGCTTCATCTGTCCCAGAGGTG CAAATGTCTCAGTATGTTCCAGCACTGGAGAAACTAGCTACCTTGAGGTTGCTACAGCAGGTGTCTAATGTCTACCAGACAATGAAGATCGAGACCTTAT CCGGGATGATCCCCTTCTTTGATTTTTCGGTAGTGGAGAAGATTTCTGTGGATGCTGTTAAGCAGAAGTTTGTATCAATGAAAGTCGACCACATGAAAAA TGTCATAATTTTCTGCAAAGTGAGTCTTGAGTCTGATGGTTTAAGGGACCACCTTGCCAATTTTGCTGAACAATTGAACAAGGCAAGACAAATGATTTAT CCTCCAGAGAGGAAGCCATCAAAACTTGGAGCTTTACTTCCCTCTTTGACTGAGGTTGTTGCCAAGGAACACAAGAGGCTTCTTGCTCGGAAATCAATTA TTGAGAAGAGGAAAGAAGAACAAGAACGGCAACTTCTTGAAATGGAACGTGAGGAAGAGTCGAAGAAGTTAAGGCTGCAGAAAATAACTGAAGAAGCTGA ACAAAGAAGACTTGCAGCTGAGTATGAGCAGAGGAAGAACCAGAGGATCCTCAGGGAAATAGAGGAAAGACAGAAGGAGGAAACTCAAGCTTTGCTTCAG GAAGCTGAAAAGCGTATTAAAAAGAAGGGGAAAAAGCCAATCATAGAGGGGGATAAACTGTCCAGGCAAACTCTGGTGGAGTTGGCATTGACTGAACAAC TCCGAGAAAGACAAGAAATGGAGAAGAAACTGCAAAAATTAGCTAAAACTATGGATTATTTGGAAAGAGCTAAAAGAGAGGAGGCTGCTCCCCTGATTGA AGCTGCATATCAACAGCGCCTAGTGGAAGAGAGGATTCTTCATGAGCATTTGCAGCAGCAAGAGGTTGAACTGAGCCAACAGCGCCATGAGGGAGATCTC AGGGAGAAGGACAGGCTTATTCGAATGATAGGCAATAAAGAGATATATCAAGAGAGAGTTGTTAGTCATCGCCAAGCAGAATTTAACAGATTGAAGCAGG AAAAGGAGGAGCGGATCTCTAGGATTTTACTGACTAGGAGACAGGAGAGGGAAAAATTGAGGAAGCTGAAGTTTTATCTGAAGCTAGAAGAAGAGAAGCA GGAAAAATTGCGTGCGGAGGAAGAAGCACGGAAGCAAGAAGAGGCTGAAAGGCGAAAGAAGGAAGAGGCTGAACGCCTGGCAAAATTAGCCGAAATCGCT GAAAAGCAGAGGCAGAGAGAACTGGAACTCGAAGAAAAGGAAAGAAAGAGAAGAGAAGAATTGTTGGGCCGAACCACTGAAGCTACTTTGAAGCCTTCTG AGCCTCTTTCCCGTCCGCCTGAGCCTCTATCTGCTGCTCCTGCTGCAGCTGCTGCAGCACCAGCTGCTGGGAAATATGTTCCCAAGTTCCGACGTGAGAG GACTGAAGGTGCAGGTGCTGCTGCTGCTGCACCTCCTCCGGAAACTGATCGCTGGGCTAAGCCAGATGGTGACAGGTGGCGCAGTGGTGATGATCGGAGA CCCTCAGCATTTGGTTCAGGTTCAAGGGGATCATCCACATGGTCCAGGAACCGTTGATTGTTGTGCCTTAACTTATCCACCATCATCCTTGCCTACTATT GTGCTGGTTTTTGGTCTCCATTTTGAGTTCTTGAATTATTTTTTATACTGAGTTGAATTTACAATCCAGTTGGATTTGTCTTGGTAATCGAAAATTCGCA TCGTAAGATATTGCAGACCTATTTTTATTCTTGTTGCCATACTGAATTTTGCCATAAAAATAATCTGTTGCCATATTTTCTTGTTTTATTTGGTATTGAA ATATTTTTCAAAGTGCGCTGGCAAGGGTATATCATCTGTATTTTCGGCCTCTTTGCCATTAAATTCAGAGCTTAGATTTATGTGGGAATAAGTGTTGCAC GTTTAGAC BLAST |
| Tissue | pods |
| Gene name | LI_gene_174849; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_280684
| Blastp | Eukaryotic translation initiation factor 3 subunit A from Arabidopsis with 71.56% of identity |
|---|---|
| Blastx | Eukaryotic translation initiation factor 3 subunit A from Arabidopsis with 78.18% of identity |
| Eggnog | Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome (By similarity)(ENOG410XQ37) |
| Kegg | Link to kegg annotations (AT4G11420) |
| CantataDB | Link to cantataDB annotations (CNT0000674) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019455570.1) |
| Pfam | PCI domain (PF01399.26) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |