Ll_transcript_280709

• Id Trinity: TRINITY_DN50127_c0_g2_i6
• Name Transcript: Ll_transcript_280709
• Sequence: GTTTTTCTTGCTCTCTCCTATCTTCTCCTCTTGCTGCGTTTTTTCTAGGGTAACACCAACTACGTTGCGCCACTCCAAACAACAACTGCGCCACATTCTC TTCTCAGAGTGTTTGGTGAATCGCCAATATGAGTCAATTCCTGAAGCCTGAGAATGCCCTCAAAAGGGCAGAAGAATTGATCAATGTTGGGCAGAAGCAA GATGCTTTGCAGACTCTTCATGACCTAATCACTTCAAAAAGATACCGAGCATGGCAGAAGACACTCGAAAGGATCATGTTCAAGTACGTCGAGCTGTGTG TTGAAATGCGTAAAGGGCGGTATGCGAAGGATGGGCTCATTCAGTATCGTATCATATGTCAGCAAGTTAATGTTGGTTCTCTGGAAGAGGTGATCAAGCA TTACATTCACCTCTCGACTGAGAAAGCTGAAAAGGCCCGCAGCCAGGCACAGGAGTTGGAAGATGCTCTCGATGTTGATGATTTAGAGGCAGATAAAAAG CCTGAGGACCTGATGCTCAGCTACGTCAGCGGCGAAAAGGGGAAAGAAAGATCTGACCGTGAGCTTGTTACTCCATGGTTTAAGTTTCTTTGGGAAACAT ACAGGACAGTTCTTGAAATTTTGCGAAACAACTCCAAATTGGAAGCCCTATATGCTATGACAGCTCATCGAGCTTTCCAGTTCTGTAAGCAATATAAGCG AACGACTGAGTTCCGCAGACTTTGTGAAATCATAAGAAACCACTTGGCCAATCTGAATAAATACCGTGACCAACGGGACCGACCTGATCTTTCTGCTCCT GAAAGCTTGCAACTGTATCTTGATACAAGATTTGAGCAGCTGAAAATTGCAACTGAACTTGAACTCTGGCAGGAAGCTTTTCGGTCAGTTGAAGATATAC ATGGCCTAATGTGCTTGGTCAAGAAAACGCCGAAATCGTCATTGATGGTCGTTTACTATGCTAAGCTGACCGATATATTTTGGATATCATCAAGTCATTT ATATCATGCATATGCATGGTTCAGGCTCTTTTTATTACAAAGGAGCTTCAATAAGAATCTGAGTCAGAAGGATTTGCAATTGATAGCTTCATCTGTTGTT CTGGCTGCACTTTCGGTTCCTCCTCATGATCACACTCATGGTGCATCTCATTTTGAACTGGAGCATGAGAAGGAGAGAAATTTCAGGATGGCTAACCTGA TCGGCTTTAATCTTGAAACCAAATCTGAAAGCAGAGAAGTGCTTTCCAGGTCATCGCTTCTTGCTGAACTGGCTTCCAAGGGTGTCATGTCTTGTGTAAC TCAGGAAGTGAAGGACATTTACCATCTTCTGGAACACGAATTTCTTCCGTCAGATCTTGCATTAAAAGTGCAGCCATTGTTAACCAAAATCTCGAAGTTA GGGGGTAAGCTTTCCACTGCTTCATCTGTCCCAGAGGTGCAACTGTCTCAGTATGTCTCGGCACTGGAGAAACTGTCTACCTTGAGGTTGCTACAGCAGG TGTCTAATGTGTATCAGACAATGAAGATCGAGACTTTATCTGGGATGATCCCCTTCTTTGATTTTTCTGTAGTGGAAAAAATTTCTGTGGATGCTGTTAA GCAGAAGTTTGTATCAATGAAAATTGATCACATGCGAAATGTTGTAGTTTTCTCCAAAGTGAGTCTTGAGTCTGATGGTTTAAGGGATCACTTGGCCAAT TTTGCTGAACAATTGAACAAGGCAAGACAAATGATTTATCCTCCAGAGAGGAAGCCATCAAAACTTGGAGCTTTACTTCCCTCTTTGACTGAGGTTGTTG CCAAGGAACACAAGAGGCTTCTTGCTCGGAAATCAATTATTGAGAAGAGGAAAGAAGAACAAGAACGGCAACTTCTTGAAATGGAACGTGAGGAAGAGTC GAAGAAGTTAAGGCTGCAGAAAATAACTGAAGAAGCTGAACAAAGAAGACTTGCAGCTGAGTATGAGCAGAGGAAGAACCAGAGGATCCTCAGGGAAATA GAGGAAAGACAGAAGGAGGAAACTCAAGCTTTGCTTCAGGAAGCTGAAAAGCGTATTAAAAAGAAGGGGAAAAAGCCAATCATAGAGGGGGATAAACTGT CCAGGCAAACTCTGGTGGAGTTGGCATTGACTGAACAACTCCGAGAAAGACAAGAAATGGAGAAGAAACTGCAAAAATTAGCTAAAACTATGGATTATTT GGAAAGAGCTAAAAGAGAGGAGGCTGCTCCCCTGATTGAAGCTGCATATCAACAGCGCCTAGTGGAAGAGAGGATTCTTCATGAGCATTTGCAGCAGCAA GAGGTTGAACTGAGCCAACAGCGCCATGAGGGAGATCTCAGGGAGAAGGACAGGCTTATTCGAATGATAGGCAATAAAGAGATATATCAAGAGAGAGTTG TTAGTCATCGCCAAGCAGAATTTAACAGATTGAAGCAGGAAAAGGAGGAGCGGATCTCTAGGATTTTACTGACTAGGAGACAGGAGAGGGAAAAATTGAG GAAGCTGAAGTTTTATCTGAAGCTAGAAGAAGAGAAGCAGGAAAAATTGCGTGCGGAGGAAGAAGCACGGAAGCAAGAAGAGGCTGAAAGGCGAAAGAAG GAAGAGGCTGAACGCCTGGCAAAATTAGCCGAAATCGCTGAAAAGCAGAGGCAGAGAGAACTGGAACTCGAAGAAAAGGAAAGAAAGAGAAGAGAAGAAT TGTTGGGCCGAACCACTGAAGCTACTTTGAAGCCTTCTGAGCCTCTTTCCCGTCCGCCTGAGCCTCTATCTGCTGCTCCTGCTGCAGCTGCTGCAGCACC AGCTGCTGGGAAATATGTTCCCAAGTTCCGACGTGAGAGGACTGAAGGTGCAGGTGCTGCTGCTGCTGCACCTCCTCCGGAAACTGATCGCTGGGCTAAG CCAGATGGTGACAGGTGGCGCAGTGGTGATGATCGGAGACCCTCAGCATTTGGTTCAGGTTCAAGGGGATCATCCACATGGTCCAGGAACCGTTGATTGT TGTGCCTTAACTTATCCACCATCATCCTTGCCTACTATTGTGCTGGTTTTTGGTCTCCATTTTGAGTTCTTGAATTATTTTTTATACTGAGTTGAATTTA CAATCCAGTTGGATTTGTCTTGGTAATCGAAAATTCGCATCGTAAGATATTGCAGACCTATTTTTATTCTTGTTGCCATACTGAATTTTGCCATAAAAAT AATCTGTTGCCATATTTTCTTGTTTTATTTGGTATTGAAATATTTTTCAAAGTGCGCTGGCAAGGGTATATCATCTGTATTTTCGGCCTCTTTGCCATTA AATTCAGAGCTTAGATTTATGTGGGAATAAGTGTTGCACGTTTAGAC
• Tissue: pods
• Gene name: LI_gene_174849;
• Additional information: details;

Expression of Ll_transcript_280709

FPKM

• PAB: 11.2
• PNAB: 56.8
• PS1: 48.3
• PS2: 51.2
• PS3: 53.2
• PW1: 49.8
• PW2: 41.9
• PW3: 47.7

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_280709

• Blastp: Eukaryotic translation initiation factor 3 subunit A from Nicotiana with 73.13% of identity
• Blastx: Eukaryotic translation initiation factor 3 subunit A from Arabidopsis with 77.15% of identity
• Eggnog: -
• Kegg: Link to kegg annotations (107760201)
• CantataDB: Link to cantataDB annotations (CNT0000674)
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019425525.1)
• Pfam: PCI domain (PF01399.26)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;