Ll_transcript_279210

• Id Trinity: TRINITY_DN50150_c0_g1_i4
• Name Transcript: Ll_transcript_279210
• Sequence: GTTCTAAATGAATTTATTTTGGAGGAAGAAATTGTGTCGGTGTAAATTTGAGGAAGAATTTGTAACTTTAAAAAACTATCCCAGATTTAGAATTTGTAGT TAAATAACGAATTCCGAATCTCTCTCTAACTTCGTTCTCCGACCAGTTGCGTGATTGATCGGCGTCGTGGTCAGAAGCACGAGATCAGGTGCTCCTTCTG GTTGTTTGATTATTAGAAAGAAAGAGGACAGGGTTCCCGGCTCTTCCACTTCTCCAAAGCTCTATGAATCCAAGAAAATGATGAAAAGGCCTAAGTTGGT GATTCATTCAAGTGATTCTGAATCAAGTGATGATGACTTACCCCTGCCTCCTGCTGCCAGGCTTGGCCCTGAAACCATCCGAGTCTGTACTGGTTTGACT GCTCTCCAGCGCCGCCCGGAGCATGGTGCCATTGACATGAGTAGGAAGAGGGATAGAGTTGAGCAACTTGGGTGCAATGGGGATGGTATGCTTGAGGAGA ATAATGGTTTGGAGGGGAGGGAAATGAAACGTAATAAGTTGGATGTGTTTGATTTCAATGAATACGATGGCATGGATGCTGAAATGATGAGAATGGGGCA TTTTGATAATAACAAGGTTGATTTAGGAGGAAGAAGAAGGTTCATGCGAGGAATGCATGCTGCTAGAAGTGCCATTCATAGGGAATTTGAAAGTGGTTCA AGCAGAAACGTCGTCAATAAAAGAAAAAACTCCTACAATGACAGGGCAAGCGGGTTGTGTATGGGAGATAGTGTTGACCATAGTAGGTTGAAGACGAACA GTGATGGAGCTAAGCGACCTGCACCCTTGTTAAGGGACAAGCTTAATTCAGACGAATCTGTCAGGGTTCAGGGTAAAAATGGTGTTCTGAAGGTGATGGT TAATAAAAAGAAGGCGGGTAAGCTACTAGAACACTCTGATCATCACAAACATGTAGAAAGCCGATATAGTTTGAGGAATGAGAGTACTTCCAAGAGGAAT GCTCATATCTGTCCTTCATCACACTTGGAAACAAAACCTGTTGAGAAACATTGCTTACTTGCTAGGCCAAAAAAGAAACAGATAGCAGCAAGAAAGCAGC TGTCATGTATGGACGGTAAGGGTGGTGAGCAAAATTCAGATGATAGTGACATATCACCAAGTCTTGGAGTAAAGAACTCTGAAGTTCGCAAGTCTTCAAA GAAGATAATTTCTGAAGATGATCATTCTCCTAAGCATGAAAAACTGCCAACTACAAAGACAAAAGAAGTAAAAGTCAAGCGTGGTAGTGGTACAGAGAAA CAGAAGCTAAGAGAACAAATACGTGAGATGCTGCTTAATGCAGGTTGGACCATAGACCATCGCCCTCGAAGGAATAGAGATTATCTGGATGCAGTTTACA TTCACCCTGGGGGTACAGCTTATTGGTCTATCATCAAGGCCTATGATGCACTTCAAAAGCAATTGAATGATGATGATTATGAAGCCAAGCCCAAAGGCGA GACTTCTTCTTTTGCTCCTATCGCAAATGATGTGCTCAGAAAGTTGACAAGAAACACTCGGAAGAAGATGGAGAAAGACTTGAAGAAGAAGGAAAGAGAT GATAAGAAGCGAAGAGATGATAGTGAGAGTGATAGTGGAGAAGAGCTGCACATCAAAAGATCCTCCAGAACGAAGCGTTGTAAGAATGACATGGATAGTG ATAGCAATGAAGAAAAGTTAAGCTCATTTCTAAAGCAAGGAAGTAAGTCCAGAAAAGCTAGAATGACTGAAAATGCTATTACCCATCATTCAAGTGGTGG AACTGAAAAATCACTCTCTGGAAGTGAGCCTCATCTCCTGCATGGTAGTAGGAAAAGTAGAAGGCACGGAAGGTGCACTTTATTAGTTCGTAATTCTAAC AAGGGAACAAATTCAGAATTTGGCGACTTTGTTCCATATACTGGTAAAAGAACAGTGCTTTCCTGGTTGATTGACTCTGGGGTAGTACAGTTAAGCCAAA AGGTTCAGTACTGTAAAAGGAAGCGAGTTTTGCTGGAGGGATGGATCACAAGAGACGGCATTCACTGTGTCTGCTGTAGTAAGATCCTCACAGTTTCAAA GTTTGAGCAACACGCAGGAAGCAAGTTGCACCAGCCATATCAAAACATATTTTTGAAATCTGGGGTTTCTCTTCTACAGTGCCAGATAGATGCGTGGAAT AGACAAGAAAACTCTGAGAAAATTAGTTTCCATTCAGTAGATATTGATGGTGATGATCCAAATGATGATACTTGTGGTATATGTGGAGATGGAGGGGATT TGATTTGTTGTGATGGTTGTCCATCAACATTTCATCAGAATTGCTTGGATATACAGATGCTCCCCCCTGGTGAATGGCATTGCCTAAATTGTACCTGTAA GTTTTGTGGAATAGGAAGTGTGAATATTAACAAAGAAGATGATGCAGCTGCATATGCCTTACACACTTGTGCTTTATGCGAGAAAAAATATCATAACATT TGTACTAAGGAGGTGGACGCTGTTCATACTAACTCCAATATGTCAGGACCTTACTTTTGCGGAAAAGACTGCAAAGAGCTTTTTGAGCACTTGAAGAAGT ACCTCAGTACCAAGTATGAACTAGATGCAGGCTTTACATGGTCTCTTATTCATAGAACAGATGAAGACTCTGAGGCAGCTAGTAGGGGAGTTACCCAGAG GGTGGAATGCAACTCCAAGCTAGCTGTTGCACTGACTGTGATGGATGAATGCTTCTTACCGGTTATCGATCGGAGGAGTGGGATCAATTTAATCCATAAT GTTTTATATAATAGTGGGTCAAACTTCAATCGGTTGAATTATAATGGCTTTTATACTGCTATTTTGGAGCGAGGGGATGAAATAATTTCTGCAGCATCTA TCAGGTTCCATGGGACTACGTTAGCAGAGATGCCCTTCATTGGAACTCGACATATATATAGGCATCAGGGGATGTGCCGCCGGCTTTTTTCTGCCATTGA ATTGGCTCTTTGCTCTTTGAAGGTTGAGAAACTGGTTATTCCTGCAATTTCTGAACTCATTCAGACATGGACAACAGTTTTTGGCTTCACACATCTTGAG GAATCACTCAGACAAGAAATGAGGTCTTTGAATATGTTGGTCTTCCCTGGCATAGATATGTTACAGAAGCTGCTCATGCAAGAAGGAAAAGTTGATGGTA ATACAACCACTGCAGGTGTTGTATTAGCAACAGGTGCTAAGAGGAAGGTTTTCAATAAGCCCGAAATGGCTGGTAGGCTAGATGTGGATTTCCCTGCTGT ACACAATCCTCATGGAAGTGATGCTGCTAGTTCAAATCCTGCTAATGAGATAAATAATGAATGTAGTGCTGCTTCTCAAGAGCTAAACAATCAAGTTTTG GTTGATAGGACTGTGTGCTCCAAATATTCCTCTGAGGAAAGATTATCTGATGATTCTGTTTCAGATAAATGTGTTTCTTCTTCTAGTACTAGTCATGGTG TACTAGAAAGGGACAATAAAATAGCCGCAGGTTCTCCAGTTAATGATAAATTGCATTCTTCTCCCAAATGTCAAATCAATTCACAAAATGAAAAATCTGT GACTGGACCTCCATTAGATGCTACAGATTGCCATGAGATTCCATTTTTGGGTCAGGAAACTGCTTGTTCTAGTCCTGGTTCTACCGAAAACCTGATTGAA CCTGTTTCTGGCAGGAAATGTCAAATGGCCGCTGATATAAACTGCGATTCATTTGAGCTCGGCATTAATCCATTGTTGGAGTCTCGAGTTGCAGAAAATG GTTTGTCTTCTAAAGAGGTTGATATGAATGACGCCTTTGATGAGGTTCTTGAAGCTTGTCCTTCGGTAAATTTATCTCAAGATAAAATTACCAAGGAGAA TAATGAAAATATAGATGCCTCTGGTTCTGTTCTTGGTCATTCTGGTGAGAGTTTCTTGCAAGTAAGATCTGATCTGAATTGTGAAACTGCACAAGAGGGA GAAAAGAATTTACATTTGGGCACAGAAGTTGCTTCAAATAAAATTAATGTTGATGAAATTGGCCTAAATGCATCCGGTCGTAGTTCTGAGACTGATCCAG TATAAGAAAATGGCCAAAGCTAATAGTGCTGATGTTTTTAGCTCCCATGCCCATGCTACTTTCCTCACAAGCTATCTTTCAACGATTCAATCAATTTTCA TAGCTTTGGAGCTCATGTTTATCGGGATAATATGAATAGGTTCTATTGATTACAATTTTCAAGCGAAAGTATTAATTGGTTCCTTGGTAAGTATGAAATT TTTAAGGTTCAAAGTTGTATTTCATGCGAATGTTTCTTCTGCCAAAATGCTTGAAGATTACTTACTCTTGCTCATGATCTGTCTCAAATACTTGGTCATA TGGGTGAGGTTGCTGACCTGTAATATGCAGCAATTCTTTATAACTGGCAGATCCTTTAGTGTTATATGATTTTGGTTCTGTTGTCACTGAATCTGGTGGT GAGTTTGGCTTCCTTCTCAAGCTACATGTGCCCTTCACTATTGGCCTACAATAATTAATCACATGGCATCAGTAGTGGCAGATACTATGCGCAGTTTTTT TGTTTTGGTTGGCAGCGTGATTTTTTGGCTTGAATACAATTTCATGGGTCATTGATGGAAGCATGAAACTGTTTCTTTCATTCCGATAGCAGCACCTTCT ACTCAGCCTTATGATTCTTCCTCATTCCATAAATTTGGTGTTAATGTTCCATTTTTCTGGATGTTAATACTTTCACCAGAACTTTGTACAATTATATCAA AACCTTAGGTATTTGAATAGGAGGATTTTCCTAAAGGTCTGGAACCTTATCTTTATGTGCAGTGTGCAGTAAATAACCTTATCCTGCTTGTTCTTTGTAC ATGTTGTTGTGGCTGGGTGGGTGATGTTTTCATTTTGAGTGAAAACCAATTTCTATACTCTCATGTTAAACGAAATGAGAGTATGAATTTGTATTGTGAT AACGCATCGGTAAATATCATTTGCTTATTATCCAATATGATAAAACAAAACATGCAGAGATGGATAAAGATGTGATGAAAGAGAATCTTGAAGCTGGAAC TGTGACTTTCAGGCGAATATAGAGATTTATGGTTATATATGCTTTTAACATTCACGTTTGTAATTGTCTTACAGGAAGTGACTTTCCGCGAATCTGGTGC ATGTCATGTAAGACTAATAGTAATACTATCACCTTTATGTATGTGCAGTTTCAAAAGGGGC
• Tissue: pods
• Gene name: LI_gene_175020;
• Additional information: details;

Expression of Ll_transcript_279210

FPKM

• PAB: 0.5
• PNAB: 0.2
• PS1: 1
• PS2: 0.7
• PS3: 1.3
• PW1: 1.2
• PW2: 2
• PW3: 0.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_279210

• Blastp: Increased DNA methylation 1 from Arabidopsis with 41.29% of identity
• Blastx: Increased DNA methylation 1 from Arabidopsis with 41.59% of identity
• Eggnog: PHD(ENOG410Y0W7)
• Kegg: Link to kegg annotations (AT3G14980)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019452849.1)
• Pfam: TPL-binding domain in jasmonate signalling (PF16135.4)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;